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RNA-Seq of Plant-Parasitic Nematode at Various Stages of Its Development.

作者信息

Choi Inchan, Subramanian Parthiban, Shim Donghwan, Oh Byung-Ju, Hahn Bum-Soo

机构信息

Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju, South Korea.

Department of Forest Genetic Resources, National Institute of Forest Science, Suwon, South Korea.

出版信息

Front Genet. 2017 Nov 27;8:190. doi: 10.3389/fgene.2017.00190. eCollection 2017.

DOI:10.3389/fgene.2017.00190
PMID:29230237
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5711784/
Abstract
摘要

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本文引用的文献

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NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data.NABIC：一个用于搜索、可视化和共享农业基因组学数据的新接入门户。
Evol Bioinform Online. 2016 Feb 1;12:51-8. doi: 10.4137/EBO.S34493. eCollection 2016.
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CD-HIT: accelerated for clustering the next-generation sequencing data.CD-HIT：用于加速下一代测序数据聚类的工具。
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Full-length transcriptome assembly from RNA-Seq data without a reference genome.无参考基因组的 RNA-Seq 数据的全长转录组组装。
Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883.
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Quality control and preprocessing of metagenomic datasets.宏基因组数据集的质量控制和预处理。
Bioinformatics. 2011 Mar 15;27(6):863-4. doi: 10.1093/bioinformatics/btr026. Epub 2011 Jan 28.
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Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
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Transcriptome analysis of root-knot nematode functions induced in the early stages of parasitism.寄生早期根结线虫诱导功能的转录组分析
New Phytol. 2007;176(2):426-436. doi: 10.1111/j.1469-8137.2007.02181.x. Epub 2007 Aug 10.
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Comprehensive transcriptome profiling in tomato reveals a role for glycosyltransferase in Mi-mediated nematode resistance.番茄的综合转录组分析揭示了糖基转移酶在Mi介导的线虫抗性中的作用。
Plant Physiol. 2007 Jun;144(2):1079-92. doi: 10.1104/pp.106.090241. Epub 2007 Apr 13.
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A set of genes differentially expressed between avirulent and virulent Meloidogyne incognita near-isogenic lines encode secreted proteins.在无毒和有毒南方根结线虫近等基因系之间差异表达的一组基因编码分泌蛋白。
Mol Plant Microbe Interact. 2003 Dec;16(12):1077-84. doi: 10.1094/MPMI.2003.16.12.1077.
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Analysis and functional classification of transcripts from the nematode Meloidogyne incognita.南方根结线虫转录本的分析与功能分类
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