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济州岛海洋沉积物中的微生物群落组成:新一代测序调查

Microbial Community Composition in the Marine Sediments of Jeju Island: Next-Generation Sequencing Surveys.

作者信息

Choi Heebok, Koh Hyeon-Woo, Kim Hongik, Chae Jong-Chan, Park Soo-Je

机构信息

Department of Architectural Engineering, Jeju National University, Jeju 63243, Republic of Korea.

Department of Biology, Jeju National University, Jeju 63243, Republic of Korea.

出版信息

J Microbiol Biotechnol. 2016 May 28;26(5):883-90. doi: 10.4014/jmb.1512.12036.

Abstract

Marine sediments are a microbial biosphere with an unknown physiology, and the sediments harbor numerous distinct phylogenetic lineages of Bacteria and Archaea that are at present uncultured. In this study, the structure of the archaeal and bacterial communities was investigated in the surface and subsurface sediments of Jeju Island using a next-generation sequencing method. The microbial communities in the surface sediments were distinct from those in the subsurface sediments; the relative abundance of sequences for Thaumarchaeota, Actinobacteria, Bacteroides, Alphaproteobacteria, and Gammaproteobacteria were higher in the surface than subsurface sediments, whereas the sequences for Euryarchaeota, Acidobacteria, Firmicutes, and Deltaproteobacteria were relatively more abundant in the subsurface than surface sediments. This study presents detailed characterization of the spatial distribution of benthic microbial communities of Jeju Island and provides fundamental information on the potential interactions mediated by microorganisms with the different biogeochemical cycles in coastal sediments.

摘要

海洋沉积物是一个具有未知生理特性的微生物生物圈,这些沉积物中蕴藏着众多目前尚未培养的细菌和古菌的不同系统发育谱系。在本研究中,利用下一代测序方法对济州岛表层和次表层沉积物中的古菌和细菌群落结构进行了调查。表层沉积物中的微生物群落与次表层沉积物中的不同;奇古菌门、放线菌门、拟杆菌门、α-变形菌纲和γ-变形菌纲的序列相对丰度在表层沉积物中高于次表层沉积物,而广古菌门、酸杆菌门、厚壁菌门和δ-变形菌纲的序列在次表层沉积物中比表层沉积物中相对更丰富。本研究详细描述了济州岛底栖微生物群落的空间分布特征,并提供了有关微生物介导的与沿海沉积物中不同生物地球化学循环潜在相互作用的基础信息。

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