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极端环境的功能宏基因组学

Functional metagenomics of extreme environments.

作者信息

Mirete Salvador, Morgante Verónica, González-Pastor José Eduardo

机构信息

Laboratory of Molecular Adaptation, Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain.

Laboratory of Molecular Adaptation, Department of Molecular Evolution, Centro de Astrobiología (CSIC-INTA), Torrejón de Ardoz, Madrid, Spain.

出版信息

Curr Opin Biotechnol. 2016 Apr;38:143-9. doi: 10.1016/j.copbio.2016.01.017. Epub 2016 Feb 20.

Abstract

The bioprospecting of enzymes that operate under extreme conditions is of particular interest for many biotechnological and industrial processes. Nevertheless, there is a considerable limitation to retrieve novel enzymes as only a small fraction of microorganisms derived from extreme environments can be cultured under standard laboratory conditions. Functional metagenomics has the advantage of not requiring the cultivation of microorganisms or previous sequence information to known genes, thus representing a valuable approach for mining enzymes with new features. In this review, we summarize studies showing how functional metagenomics was employed to retrieve genes encoding for proteins involved not only in molecular adaptation and resistance to extreme environmental conditions but also in other enzymatic activities of biotechnological interest.

摘要

对于许多生物技术和工业过程而言,对在极端条件下发挥作用的酶进行生物勘探尤为重要。然而,获取新型酶存在相当大的限制,因为只有一小部分来自极端环境的微生物能够在标准实验室条件下培养。功能宏基因组学的优势在于不需要培养微生物或已知基因的先前序列信息,因此是挖掘具有新特性酶的一种有价值的方法。在本综述中,我们总结了一些研究,这些研究展示了功能宏基因组学如何被用于检索不仅编码参与分子适应和对极端环境条件抗性的蛋白质,还编码具有生物技术意义的其他酶活性的基因。

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