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肾移植受者中BK病毒感染及供体肾免疫反应的建模

Modeling Immune Response to BK Virus Infection and Donor Kidney in Renal Transplant Recipients.

作者信息

Banks H T, Hu Shuhua, Link Kathryn, Rosenberg Eric S, Mitsuma Sheila, Rosario Lauren

机构信息

Center for Research in Scientific Computation, North Carolina State University, Raleigh, NC 27695-8212 USA.

Partners Human Research Committee, Massachusetts General Hospital, Boston, MA 02114 USA.

出版信息

Inverse Probl Sci Eng. 2016 Jan 1;24(1):127-152. doi: 10.1080/17415977.2015.1017484. Epub 2015 Mar 13.

DOI:10.1080/17415977.2015.1017484
PMID:26925154
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4767521/
Abstract

In this paper we develop and validate with bootstrapping techniques a mechanistic mathematical model of immune response to both BK virus infection and a donor kidney based on known and hypothesized mechanisms in the literature. The model presented does not capture all the details of the immune response but possesses key features that describe a very complex immunological process. We then estimate model parameters using a least squares approach with a typical set of available clinical data. Sensitivity analysis combined with asymptotic theory is used to determine the number of parameters that can be reliably estimated given the limited number of observations.

摘要

在本文中,我们基于文献中已知和假设的机制,运用自抽样技术开发并验证了一个针对BK病毒感染和供体肾的免疫反应的机理数学模型。所呈现的模型并未涵盖免疫反应的所有细节,但具备描述非常复杂免疫过程的关键特征。然后,我们使用最小二乘法和一组典型的可用临床数据来估计模型参数。结合渐近理论的敏感性分析用于确定在观测值数量有限的情况下能够可靠估计的参数数量。

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本文引用的文献

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An HIV epidemic model based on viral load dynamics: value in assessing empirical trends in HIV virulence and community viral load.基于病毒载量动力学的 HIV 流行模型:评估 HIV 毒力和社区病毒载量的经验趋势的价值。
PLoS Comput Biol. 2014 Jun 19;10(6):e1003673. doi: 10.1371/journal.pcbi.1003673. eCollection 2014 Jun.
2
Experimental Design for Vector Output Systems.矢量输出系统的实验设计
Inverse Probl Sci Eng. 2014 Jan 1;22(4):557-590. doi: 10.1080/17415977.2013.797973.
3
Evaluation of quantification of HIV-1 RNA viral load in plasma and dried blood spots by use of the semiautomated Cobas Amplicor assay and the fully automated Cobas Ampliprep/TaqMan assay, version 2.0, in Kisumu, Kenya.评价半自动 Cobas Amplicor 检测法和全自动 Cobas Ampliprep/TaqMan 检测法(版本 2.0)定量检测肯尼亚基苏木地区血浆和干血斑中 HIV-1 RNA 病毒载量的效果。
J Clin Microbiol. 2013 Apr;51(4):1208-18. doi: 10.1128/JCM.03048-12. Epub 2013 Feb 6.
4
Experimental Design for Distributed Parameter Vector Systems.分布式参数向量系统的实验设计
Appl Math Lett. 2013 Jan 1;26(1):10-14. doi: 10.1016/j.aml.2012.08.003.
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Modelling and optimal control of immune response of renal transplant recipients.肾移植受者免疫反应的建模与最优控制。
J Biol Dyn. 2012;6(2):539-67. doi: 10.1080/17513758.2012.655328. Epub 2012 Feb 1.
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Comparison of Optimal Design Methods in Inverse Problems.逆问题中最优设计方法的比较
Inverse Probl. 2011 Jul 1;27(7). doi: 10.1088/0266-5611/27/7/075002.
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Standard Error Computations for Uncertainty Quantification in Inverse Problems: Asymptotic Theory vs. Bootstrapping.逆问题中不确定性量化的标准误差计算:渐近理论与自举法
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