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食菌变形杆菌新种,一种源自韩国传统发酵海鲜腌制品的群游细菌,以及变形杆菌属的修订描述

Proteus cibarius sp. nov., a swarming bacterium from Jeotgal, a traditional Korean fermented seafood, and emended description of the genus Proteus.

作者信息

Hyun Dong-Wook, Jung Mi-Ja, Kim Min-Soo, Shin Na-Ri, Kim Pil Soo, Whon Tae Woong, Bae Jin-Woo

机构信息

Department of Life and Nanopharmaceutical Sciences and Department of Biology, Kyung Hee University, 1 Hoegi-dong, Dongdaemun-gu, Seoul 130-701, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2016 Jun;66(6):2158-2164. doi: 10.1099/ijsem.0.001002. Epub 2016 Mar 4.

Abstract

A novel Proteus-like, Gram-stain-negative, facultatively anaerobic, rod-shaped bacterium, designated strain JS9T, was isolated from Korean fermented seafood, Jeotgal. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain JS9T belonged to the genus Proteus in the family Enterobacteriaceae. The highest 16S rRNA gene sequence similarity of strain JS9T was to Proteus vulgaris KCTC 2579T (98.98 %) and the genomic DNA G+C content is 39.0 mol%. DNA-DNA hybridization values were measured and strain JS9T showed <20.8 % genomic relatedness with closely-related members of the genus Proteus. The isolate showed bacterial motility and swarming activity similar to those of pathogenic Proteus mirabilis but distinct from those of other species of the genus Proteus. The isolate grows optimally at 30 °C, at pH 7, and in the presence of 2 % (w/v) NaCl. The main respiratory quinones are ubiquinone Q-8 and Q-10, and the major cellular fatty acids are C16 : 0, summed feature 3 and summed feature 8. The polar lipids comprise phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified amino lipid, two unidentified amino-phospholipids, and three unidentified lipids. Based on phylogenetic, phenotypic, chemotaxonomic and genotypic analyses, strain JS9T represents a novel species of the genus Proteus, for which the name Proteus cibarius sp. nov. is proposed. The type strain is JS9T (=KACC 18404T=JCM 30699T). An emended description of the genus Proteus is also provided.

摘要

从韩国发酵海鲜腌鱼中分离出一株新的变形杆菌样革兰氏阴性兼性厌氧杆状细菌,命名为JS9T菌株。基于16S rRNA基因序列的系统发育分析表明,JS9T菌株属于肠杆菌科变形杆菌属。JS9T菌株的16S rRNA基因序列与普通变形杆菌KCTC 2579T的相似度最高(98.98%),基因组DNA G+C含量为39.0 mol%。测定了DNA-DNA杂交值,JS9T菌株与变形杆菌属密切相关成员的基因组相关性<20.8%。该分离株表现出与致病性奇异变形杆菌相似的细菌运动性和群游活性,但与变形杆菌属的其他物种不同。该分离株在30℃、pH 7和2%(w/v)NaCl存在的条件下生长最佳。主要呼吸醌为泛醌Q-8和Q-10,主要细胞脂肪酸为C16:0、特征性总和3和特征性总和8。极性脂质包括磷脂酰甘油、磷脂酰乙醇胺、二磷脂酰甘油、一种未鉴定的氨基脂质、两种未鉴定的氨基磷脂和三种未鉴定的脂质。基于系统发育、表型、化学分类和基因型分析,JS9T菌株代表变形杆菌属的一个新物种,为此提出变形杆菌食源种(Proteus cibarius sp. nov.)的名称。模式菌株为JS9T(=KACC 18404T=JCM 30699T)。还提供了变形杆菌属的修订描述。

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