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来自猪后肠的不能产生粪臭素的巨球型菌属菌株DJF_B143的基因组序列草图

Draft Genome Sequence of Megasphaera sp. Strain DJF_B143, an Isolate from Pig Hindgut Unable to Produce Skatole.

作者信息

Li Xiaoqiong, Marshall Ian P G, Schreiber Lars, Højberg Ole, Canibe Nuria, Jensen Bent Borg

机构信息

Department of Animal Science, Aarhus University, Tjele, Denmark

Center for Geomicrobiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.

出版信息

Genome Announc. 2016 Feb 25;4(1):e00007-16. doi: 10.1128/genomeA.00007-16.

DOI:10.1128/genomeA.00007-16
PMID:26950318
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4767908/
Abstract

The butyrate-producing Megasphaera spp. predominate in the pig hindgut and may play important roles in gut health. Moreover, one Megasphaera isolate has been reported to produce the boar taint compound, skatole. Here, we provide a 2.58-Mbp draft genome of a pig hindgut isolate, Megasphaera sp. DJF_B143, unable to produce skatole.

摘要

产生丁酸盐的巨球形菌属在猪后肠中占主导地位，可能对肠道健康发挥重要作用。此外，据报道有一种巨球形菌分离株会产生公猪异味化合物粪臭素。在此，我们提供了一株猪后肠分离株——不产生粪臭素的巨球形菌DJF_B143的258万个碱基对的基因组草图。

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本文引用的文献

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Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig.家猪生命早期粪便和鼻腔微生物组的纵向研究。
BMC Microbiol. 2015 Sep 21;15(1):184. doi: 10.1186/s12866-015-0512-7.
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Megasphaera indica sp. nov., an obligate anaerobic bacteria isolated from human faeces.印度巨球形菌，一种从人粪便中分离得到的专性厌氧菌。
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Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
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Comparative genome analysis of Megasphaera sp. reveals niche specialization and its potential role in the human gut.巨球形菌的比较基因组分析揭示了其在人类肠道中的生态位特化及其潜在作用。
PLoS One. 2013 Nov 18;8(11):e79353. doi: 10.1371/journal.pone.0079353. eCollection 2013.
7
The binning of metagenomic contigs for microbial physiology of mixed cultures.混合培养微生物生理学的宏基因组序列分类。
Front Microbiol. 2012 Dec 5;3:410. doi: 10.3389/fmicb.2012.00410. eCollection 2012.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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J Dairy Sci. 2011 Jun;94(6):2840-9. doi: 10.3168/jds.2010-3783.
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