从猪粪便中分离得到的产3-甲基吲哚（粪臭素）和4-甲基苯酚（对甲酚）的斯氏欧森氏菌SK9K4T的基因组序列草图
Draft Genome Sequence of Olsenella scatoligenes SK9K4T, a Producer of 3-Methylindole (Skatole) and 4-Methylphenol (p-Cresol), Isolated from Pig Feces.
作者信息
Li Xiaoqiong, Højberg Ole, Noel Samantha Joan, Canibe Nuria, Jensen Bent Borg
机构信息
Department of Animal Science, Aarhus University, Tjele, Denmark
Department of Animal Science, Aarhus University, Tjele, Denmark.
出版信息
Genome Announc. 2016 Feb 25;4(1):e00042-16. doi: 10.1128/genomeA.00042-16.
Abstract
Olsenella scatoligenes SK9K4(T) is a strictly anaerobic bacterium isolated from pig feces that produces the malodorous compounds 3-methylindole (skatole) and 4-methylphenol (p-cresol). Here, we report the 2.47 Mbp draft genome sequence of SK9K4(T), exploring pathways for the synthesis of skatole and p-cresol from the amino acids tryptophan and tyrosine, respectively.
摘要
产粪臭素奥尔森氏菌SK9K4(T)是一种从猪粪便中分离出的严格厌氧细菌，它能产生有恶臭的化合物3-甲基吲哚（粪臭素）和4-甲基苯酚（对甲酚）。在此，我们报告了SK9K4(T)的2.47 Mbp草图基因组序列，分别探索了从氨基酸色氨酸和酪氨酸合成粪臭素和对甲酚的途径。
相似文献
1
Draft Genome Sequence of Olsenella scatoligenes SK9K4T, a Producer of 3-Methylindole (Skatole) and 4-Methylphenol (p-Cresol), Isolated from Pig Feces.从猪粪便中分离得到的产3-甲基吲哚（粪臭素）和4-甲基苯酚（对甲酚）的斯氏欧森氏菌SK9K4T的基因组序列草图
Genome Announc. 2016 Feb 25;4(1):e00042-16. doi: 10.1128/genomeA.00042-16.
2
Olsenella scatoligenes sp. nov., a 3-methylindole- (skatole) and 4-methylphenol- (p-cresol) producing bacterium isolated from pig faeces.产粪臭素奥尔森氏菌新种，一种从猪粪便中分离出的能产生3-甲基吲哚（粪臭素）和4-甲基苯酚（对甲酚）的细菌。
Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1227-1233. doi: 10.1099/ijs.0.000083. Epub 2015 Jan 29.
3
Development of a species-specific TaqMan-MGB real-time PCR assay to quantify Olsenella scatoligenes in pigs offered a chicory root-based diet.开发一种物种特异性TaqMan-MGB实时荧光定量PCR检测方法，用于定量饲喂含菊苣根日粮的猪体内的产粪臭素奥尔森菌。
AMB Express. 2018 Jun 16;8(1):99. doi: 10.1186/s13568-018-0627-y.
4
Production of Skatole and para-Cresol by a Rumen Lactobacillus sp.粪臭素和对甲酚在反刍乳杆菌中的生成
Appl Environ Microbiol. 1981 Jan;41(1):71-6. doi: 10.1128/aem.41.1.71-76.1981.
5
Olsenella faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces.卵形拟杆菌新种，一种从人粪便中分离得到的厌氧放线菌。
Int J Syst Evol Microbiol. 2019 Aug;69(8):2323-2328. doi: 10.1099/ijsem.0.003469. Epub 2019 May 28.
6
Draft Genome Sequence of Clostridium scatologenes ATCC 25775, a Chemolithoautotrophic Acetogenic Bacterium Producing 3-Methylindole and 4-Methylphenol.产粪甾醇梭菌ATCC 25775的基因组草图序列，一种产3-甲基吲哚和4-甲基苯酚的化能自养产乙酸细菌
Genome Announc. 2014 May 15;2(3):e00459-14. doi: 10.1128/genomeA.00459-14.
7
3-Methylindole (skatole) and indole production by mixed populations of pig fecal bacteria.猪粪便细菌混合菌群产生3-甲基吲哚（粪臭素）和吲哚的情况。
Appl Environ Microbiol. 1995 Aug;61(8):3180-4. doi: 10.1128/aem.61.8.3180-3184.1995.
8
Parolsenella catena gen. nov., sp. nov., isolated from human faeces.链状帕罗氏菌属，新属，新种，从人类粪便中分离得到。
Int J Syst Evol Microbiol. 2018 Apr;68(4):1165-1172. doi: 10.1099/ijsem.0.002645. Epub 2018 Feb 15.
9
Development of a defined medium for Clostridium scatologenes ATCC 25775.用于产粪甾醇梭菌ATCC 25775的限定培养基的开发。
Lett Appl Microbiol. 2009 Apr;48(4):426-32. doi: 10.1111/j.1472-765X.2008.02546.x. Epub 2009 Feb 2.
10
Fe(III) stimulates 3-methylindole and 4-methylphenol production in swine lagoon enrichments and Clostridium scatologenes ATCC 25775.三价铁刺激猪粪富集物和产粪臭素梭菌ATCC 25775中3-甲基吲哚和4-甲基苯酚的产生。
Lett Appl Microbiol. 2009 Jan;48(1):118-24. doi: 10.1111/j.1472-765X.2008.02500.x. Epub 2008 Dec 2.
引用本文的文献
1
Dietary enrichment of resistant starches or fibers differentially alter the feline fecal microbiome and metabolite profile.饮食中添加抗性淀粉或纤维会不同程度地改变猫的粪便微生物群和代谢物谱。
Anim Microbiome. 2022 Dec 5;4(1):61. doi: 10.1186/s42523-022-00213-9.
2
Development of a species-specific TaqMan-MGB real-time PCR assay to quantify Olsenella scatoligenes in pigs offered a chicory root-based diet.开发一种物种特异性TaqMan-MGB实时荧光定量PCR检测方法，用于定量饲喂含菊苣根日粮的猪体内的产粪臭素奥尔森菌。
AMB Express. 2018 Jun 16;8(1):99. doi: 10.1186/s13568-018-0627-y.
本文引用的文献
1
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
2
Olsenella scatoligenes sp. nov., a 3-methylindole- (skatole) and 4-methylphenol- (p-cresol) producing bacterium isolated from pig faeces.产粪臭素奥尔森氏菌新种，一种从猪粪便中分离出的能产生3-甲基吲哚（粪臭素）和4-甲基苯酚（对甲酚）的细菌。
Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1227-1233. doi: 10.1099/ijs.0.000083. Epub 2015 Jan 29.
3
Draft Genome Sequence of Clostridium scatologenes ATCC 25775, a Chemolithoautotrophic Acetogenic Bacterium Producing 3-Methylindole and 4-Methylphenol.产粪甾醇梭菌ATCC 25775的基因组草图序列，一种产3-甲基吲哚和4-甲基苯酚的化能自养产乙酸细菌
Genome Announc. 2014 May 15;2(3):e00459-14. doi: 10.1128/genomeA.00459-14.
4
Draft Genome Sequence of Acid-Tolerant Clostridium drakei SL1T, a Potential Chemical Producer through Syngas Fermentation.耐酸德氏梭菌SL1T的基因组草图序列，一种通过合成气发酵的潜在化学品生产者。
Genome Announc. 2014 May 15;2(3):e00387-14. doi: 10.1128/genomeA.00387-14.
5
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
6
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.MetaCyc 数据库包含代谢途径和酶，以及 BioCyc 集合的途径/基因组数据库。
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71. doi: 10.1093/nar/gkt1103. Epub 2013 Nov 12.
7
Whole-genome sequences of DA and F344 rats with different susceptibilities to arthritis, autoimmunity, inflammation and cancer.具有不同关节炎、自身免疫、炎症和癌症易感性的 DA 和 F344 大鼠的全基因组序列。
Genetics. 2013 Aug;194(4):1017-28. doi: 10.1534/genetics.113.153049. Epub 2013 May 20.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Complete genome sequence of Olsenella uli type strain (VPI D76D-27C).尤氏奥尔森菌模式菌株（VPI D76D-27C）的全基因组序列
Stand Genomic Sci. 2010 Aug 20;3(1):76-84. doi: 10.4056/sigs.1082860.
10
Catabolic pathway for the production of skatole and indoleacetic acid by the acetogen Clostridium drakei, Clostridium scatologenes, and swine manure.产乙酸菌德氏梭菌、粪臭梭菌和猪粪中产粪臭素和吲哚乙酸的分解代谢途径。
Appl Environ Microbiol. 2008 Mar;74(6):1950-3. doi: 10.1128/AEM.02458-07. Epub 2008 Jan 25.
Zotero 插件