Sakamoto Mitsuo, Iino Takao, Hamada Moriyuki, Ohkuma Moriya
PRIME, Japan Agency for Medical Research and Development (AMED), Tsukuba, Ibaraki 305-0074, Japan.
MicrobeDivision/Japan Collection of Microorganisms, RIKEN BioResource Center, Tsukuba, Ibaraki 305-0074, Japan.
Int J Syst Evol Microbiol. 2018 Apr;68(4):1165-1172. doi: 10.1099/ijsem.0.002645. Epub 2018 Feb 15.
Strain 2CBEGH3, which is an obligately anaerobic, non-pigmented, non-spore-forming, non-motile, Gram-stain-positive coccobacillus, was isolated from a faecal sample of a healthy Japanese man. The 16S rRNA gene sequence analysis showed that strain 2CBEGH3 represented a member of the family Atopobiaceae and formed a monophyletic cluster with Olsenella uli DSM 7084 (93.6 % sequence similarity), Olsenella umbonata strain lac31 (93.0 %), Olsenella profusa JCM 14553 (92.7 %) and Olsenella scatoligenes strain SK9K4 (92.7 %) as closest neighbours and Atopobium species. The hsp60 gene sequence analysis supported the phylogenetic relationships based on the 16S rRNA gene sequences, with sequence similarity values of 82.1-84.7 % to the four species described above. A unique three-base (one amino acid residue) insertion was found in the alignment regions of the hsp60 gene sequence of strain 2CBEGH3. The major end products from d-glucose were d- and l-lactic acids produced at the ratio of 75 : 25, while four species of the genus Olsenella produced d- and l-lactic acids at ratios of 94-98 : 2-6. The isolate formed characteristic crater-like colonies on Eggerth-Gagnon agar plates. The major cellular fatty acids were C18 : 1ω9c, C18 : 1ω9c dimethyl acetal (DMA) and C16 : 0 DMA. The G+C content of the genomic DNA was 68.4 mol%. On the basis of these data, strain 2CBEGH3 represents a novel species in a novel genus of the family Atopobiaceae, for which the name Parolsenella catena gen. nov., sp. nov. is proposed. The type strain of P. catena is 2CBEGH3 (=JCM 31932=DSM 105194).
菌株2CBEGH3是一种专性厌氧、无色素、不形成芽孢、无运动性、革兰氏染色阳性的球杆菌,从一名健康日本男性的粪便样本中分离得到。16S rRNA基因序列分析表明,菌株2CBEGH3属于阿托波菌科成员,与乌利奥尔森菌DSM 7084(序列相似性为93.6%)、脐状奥尔森菌lac31菌株(93.0%)、丰富奥尔森菌JCM 14553(92.7%)和产粪臭素奥尔森菌SK9K4菌株(92.7%)形成单系聚类,为最近邻且与阿托波菌属物种聚在一起。hsp60基因序列分析支持基于16S rRNA基因序列的系统发育关系,与上述四个物种的序列相似性值为82.1 - 84.7%。在菌株2CBEGH3的hsp60基因序列比对区域发现一个独特的三碱基(一个氨基酸残基)插入。d - 葡萄糖的主要终产物是d - 和l - 乳酸,产生比例为75∶25,而奥尔森菌属的四个物种产生d - 和l - 乳酸的比例为94 - 98∶2 - 6。该分离株在埃格特 - 加尼翁琼脂平板上形成特征性的火山口状菌落。主要细胞脂肪酸为C18∶1ω9c、C18∶1ω9c二甲基缩醛(DMA)和C16∶0 DMA。基因组DNA的G + C含量为68.4 mol%。基于这些数据,菌株2CBEGH3代表阿托波菌科一个新属中的一个新物种,为此提出新属名为链状副奥尔森菌属(Parolsenella catena),新种名为链状副奥尔森菌(Parolsenella catena)。链状副奥尔森菌的模式菌株为2CBEGH3(=JCM 31932 = DSM 105194)。