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通过基于结构的工程改造细菌吲哚内酰胺异戊烯基转移酶来操纵异戊烯基化反应。

Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases.

作者信息

Mori Takahiro, Zhang Lihan, Awakawa Takayoshi, Hoshino Shotaro, Okada Masahiro, Morita Hiroyuki, Abe Ikuro

机构信息

Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.

Department of Medicinal Resources, Institute of Natural Medicine, University of Toyama, 2630-Sugitani, Toyama 930-0194, Japan.

出版信息

Nat Commun. 2016 Mar 8;7:10849. doi: 10.1038/ncomms10849.

Abstract

Prenylation reactions play crucial roles in controlling the activities of biomolecules. Bacterial prenyltransferases, TleC from Streptomyces blastmyceticus and MpnD from Marinactinospora thermotolerans, catalyse the 'reverse' prenylation of (-)-indolactam V at the C-7 position of the indole ring with geranyl pyrophosphate or dimethylallyl pyrophosphate, to produce lyngbyatoxin or pendolmycin, respectively. Using in vitro analyses, here we show that both TleC and MpnD exhibit relaxed substrate specificities and accept various chain lengths (C5-C25) of the prenyl donors. Comparisons of the crystal structures and their ternary complexes with (-)-indolactam V and dimethylallyl S-thiophosphate revealed the intimate structural details of the enzyme-catalysed 'reverse' prenylation reactions and identified the active-site residues governing the selection of the substrates. Furthermore, structure-based enzyme engineering successfully altered the preference for the prenyl chain length of the substrates, as well as the regio- and stereo-selectivities of the prenylation reactions, to produce a series of unnatural novel indolactams.

摘要

异戊二烯化反应在控制生物分子的活性方面起着至关重要的作用。细菌异戊二烯基转移酶,来自抗稻瘟链霉菌的TleC和耐热海栖放线菌的MpnD,分别以香叶基焦磷酸或二甲基烯丙基焦磷酸催化吲哚环C-7位的(-)-吲哚内酰胺V的“反向”异戊二烯化反应,生成林格比毒素或喷多霉素。通过体外分析,我们在此表明TleC和MpnD均表现出宽松的底物特异性,并接受各种链长(C5-C25)的异戊二烯基供体。对晶体结构及其与(-)-吲哚内酰胺V和二甲基烯丙基硫代磷酸酯的三元复合物的比较揭示了酶催化的“反向”异戊二烯化反应的详细结构细节,并确定了决定底物选择的活性位点残基。此外,基于结构的酶工程成功改变了对底物异戊二烯基链长度的偏好,以及异戊二烯化反应的区域和立体选择性,从而产生了一系列非天然的新型吲哚内酰胺。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6818/4786772/139e8d978134/ncomms10849-f1.jpg

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