Wahlström Helene, Comin Arianna, Isaksson Mats, Deplazes Peter
Department of Disease Control and Epidemiology, National Veterinary Institute, Uppsala, Sweden;
Department of Disease Control and Epidemiology, National Veterinary Institute, Uppsala, Sweden.
Infect Ecol Epidemiol. 2016 Mar 9;6:30173. doi: 10.3402/iee.v6.30173. eCollection 2016.
A semi-automated magnetic capture probe-based DNA extraction and real-time PCR method (MC-PCR), allowing for a more efficient large-scale surveillance of Echinococcus multilocularis occurrence, has been developed. The test sensitivity has previously been evaluated using the sedimentation and counting technique (SCT) as a gold standard. However, as the sensitivity of the SCT is not 1, test characteristics of the MC-PCR was also evaluated using latent class analysis, a methodology not requiring a gold standard.
Test results, MC-PCR and SCT, from a previous evaluation of the MC-PCR using 177 foxes shot in the spring (n=108) and autumn 2012 (n=69) in high prevalence areas in Switzerland were used. Latent class analysis was used to estimate the test characteristics of the MC-PCR. Although it is not the primary aim of this study, estimates of the test characteristics of the SCT were also obtained.
This study showed that the sensitivity of the MC-PCR was 0.88 [95% posterior credible interval (PCI) 0.80-0.93], which was not significantly different than the SCT, 0.83 (95% PCI 0.76-0.88), which is currently considered as the gold standard. The specificity of both tests was high, 0.98 (95% PCI 0.94-0.99) for the MC-PCR and 0.99 (95% PCI 0.99-1) for the SCT. In a previous study, using fox scats from a low prevalence area, the specificity of the MC-PCR was higher, 0.999% (95% PCI 0.997-1). One reason for the lower estimate of the specificity in this study could be that the MC-PCR detects DNA from infected but non-infectious rodents eaten by foxes. When using MC-PCR in low prevalence areas or areas free from the parasite, a positive result in the MC-PCR should be regarded as a true positive.
The sensitivity of the MC-PCR (0.88) was comparable to the sensitivity of SCT (0.83).
已开发出一种基于半自动磁捕获探针的DNA提取和实时PCR方法(MC-PCR),可更有效地对多房棘球绦虫的发生情况进行大规模监测。此前已使用沉淀计数技术(SCT)作为金标准评估了该检测方法的灵敏度。然而,由于SCT的灵敏度并非1,因此还使用了潜在类别分析对MC-PCR的检测特性进行评估,该方法不需要金标准。
使用了之前在瑞士高流行地区对177只狐狸进行的MC-PCR评估结果,这些狐狸于2012年春季(n = 108)和秋季(n = 69)被射杀。采用潜在类别分析来估计MC-PCR的检测特性。尽管这并非本研究的主要目的,但也获得了SCT检测特性的估计值。
本研究表明,MC-PCR的灵敏度为0.88 [95%后验可信区间(PCI)0.80 - 0.93],与目前被视为金标准的SCT的灵敏度0.83(95% PCI 0.76 - 0.88)无显著差异。两种检测方法的特异性都很高,MC-PCR为0.98(95% PCI 0.94 - 0.99),SCT为0.99(95% PCI 0.99 - 1)。在之前一项使用低流行地区狐狸粪便的研究中,MC-PCR的特异性更高,为0.999%(95% PCI 0.997 - 1)。本研究中特异性估计值较低的一个原因可能是MC-PCR检测到的是狐狸食用的受感染但无传染性的啮齿动物的DNA。在低流行地区或无该寄生虫的地区使用MC-PCR时,MC-PCR检测结果呈阳性应视为真阳性。
MC-PCR的灵敏度(0.88)与SCT的灵敏度(0.83)相当。