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药物遗传学中的隐私:华法林个体化给药的端到端案例研究。

Privacy in Pharmacogenetics: An End-to-End Case Study of Personalized Warfarin Dosing.

作者信息

Fredrikson Matthew, Lantz Eric, Jha Somesh, Lin Simon, Page David, Ristenpart Thomas

机构信息

University of Wisconsin.

Marshfield Clinic Research Foundation.

出版信息

Proc USENIX Secur Symp. 2014 Aug;2014:17-32.

PMID:27077138
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4827719/
Abstract

We initiate the study of privacy in pharmacogenetics, wherein machine learning models are used to guide medical treatments based on a patient's genotype and background. Performing an in-depth case study on privacy in personalized warfarin dosing, we show that suggested models carry privacy risks, in particular because attackers can perform what we call : an attacker, given the model and some demographic information about a patient, can predict the patient's genetic markers. As differential privacy (DP) is an oft-proposed solution for medical settings such as this, we evaluate its effectiveness for building private versions of pharmacogenetic models. We show that . We go on to analyze the impact on utility by performing simulated clinical trials with DP dosing models. We find that for privacy budgets effective at preventing attacks, . We conclude that DP mechanisms do not simultaneously improve genomic privacy while retaining desirable clinical efficacy, highlighting the need for new mechanisms that should be evaluated using the general methodology introduced by our work.

摘要

我们开启了药物遗传学中隐私问题的研究,其中机器学习模型用于根据患者的基因型和背景来指导医疗治疗。通过对个性化华法林剂量设定中的隐私问题进行深入案例研究,我们表明所建议的模型存在隐私风险,特别是因为攻击者能够实施我们所谓的行为:给定模型和关于患者的一些人口统计学信息,攻击者能够预测患者的基因标记。由于差分隐私(DP)是针对此类医疗场景经常提出的一种解决方案,我们评估了其在构建药物遗传学模型的隐私版本方面的有效性。我们表明……我们接着通过使用DP剂量模型进行模拟临床试验来分析对效用的影响。我们发现,对于有效防止攻击的隐私预算,……我们得出结论,DP机制在保留理想临床疗效的同时并不能同时改善基因组隐私,这凸显了需要采用我们工作中引入的通用方法来评估的新机制。

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本文引用的文献

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A pharmacogenetic versus a clinical algorithm for warfarin dosing.基于药理学的华法林剂量调整算法与临床算法的比较。
N Engl J Med. 2013 Dec 12;369(24):2283-93. doi: 10.1056/NEJMoa1310669. Epub 2013 Nov 19.
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A systems approach to designing effective clinical trials using simulations.系统方法在设计有效的临床试验中的应用模拟。
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Clinical trial simulation: a review.临床试验模拟:综述。
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Privacy preservation for federated learning in health care.医疗保健领域联邦学习中的隐私保护。
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Anonymization: The imperfect science of using data while preserving privacy.匿名化:在保护隐私的同时使用数据的不完美科学。
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Correlation inference attacks against machine learning models.针对机器学习模型的相关性推理攻击。
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Assessing Privacy Vulnerabilities in Genetic Data Sets: Scoping Review.评估基因数据集的隐私漏洞:范围综述
JMIR Bioinform Biotechnol. 2024 May 27;5:e54332. doi: 10.2196/54332.
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Evaluating the understanding of the ethical and moral challenges of Big Data and AI among Jordanian medical students, physicians in training, and senior practitioners: a cross-sectional study.评估约旦医学生、培训医师和高级从业者对大数据和人工智能伦理道德挑战的理解:一项横断面研究。
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PPML-Omics: A privacy-preserving federated machine learning method protects patients' privacy in omic data.PPML-Omics:一种保护隐私的联邦机器学习方法,保护了组学数据中患者的隐私。
Sci Adv. 2024 Feb 2;10(5):eadh8601. doi: 10.1126/sciadv.adh8601. Epub 2024 Jan 31.
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Enabling Health Data Sharing with Fine-Grained Privacy.实现具有细粒度隐私的健康数据共享。
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The disclosure of diagnosis codes can breach research participants' privacy.诊断编码的披露可能会侵犯研究参与者的隐私。
J Am Med Inform Assoc. 2010 May-Jun;17(3):322-7. doi: 10.1136/jamia.2009.002725.
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Anonymization of electronic medical records for validating genome-wide association studies.电子病历的匿名化用于验证全基因组关联研究。
Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7898-903. doi: 10.1073/pnas.0911686107. Epub 2010 Apr 12.
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Genomic privacy and limits of individual detection in a pool.基因组隐私与混合样本中个体检测的局限性
Nat Genet. 2009 Sep;41(9):965-7. doi: 10.1038/ng.436. Epub 2009 Aug 23.
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Pharmacogenetics of warfarin.华法林的药物遗传学。
Annu Rev Med. 2010;61:63-75. doi: 10.1146/annurev.med.070808.170037.
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Cost-effectiveness of warfarin: trial versus "real-world" stroke prevention in atrial fibrillation.华法林的成本效益:心房颤动中风预防的试验与“真实世界”对比
Am Heart J. 2009 Jun;157(6):1064-73. doi: 10.1016/j.ahj.2009.03.022.
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A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.一项全基因组关联研究证实,维生素K环氧化物还原酶复合体亚单位1(VKORC1)、细胞色素P450 2C9(CYP2C9)和细胞色素P450 4F2(CYP4F2)是华法林剂量的主要遗传决定因素。
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Estimation of the warfarin dose with clinical and pharmacogenetic data.利用临床和药物遗传学数据估算华法林剂量。
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