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转录组分析揭示了皱纹盘鲍在副溶血性弧菌感染过程中参与先天免疫的多个基因的变化。

Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection.

作者信息

Nam Bo-Hye, Jung Myunghee, Subramaniyam Sathiyamoorthy, Yoo Seung-il, Markkandan Kesavan, Moon Ji-Young, Kim Young-Ok, Kim Dong-Gyun, An Cheul Min, Shin Younhee, Jung Ho-jin, Park Jun-hyung

机构信息

Biotechnology Research Division, Aquaculture Industry Department, National Fisheries Research and Development Institute, Busan 619-902, Republic of Korea.

Codes division, Insilicogen Inc., Suwon 441-813, Gyeonggi-do, Republic of Korea.

出版信息

PLoS One. 2016 Apr 18;11(4):e0153474. doi: 10.1371/journal.pone.0153474. eCollection 2016.

DOI:10.1371/journal.pone.0153474
PMID:27088873
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4835058/
Abstract

Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It's therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection.

摘要

皱纹盘鲍(Haliotis discus hannai)是韩国、日本和中国最具价值的海洋水产物种之一。在水产养殖环境中,尤其是感染弧菌属细菌时,鲍鱼极易受到细菌感染。因此,了解皱纹盘鲍宿主抵御副溶血性弧菌感染的机制既必要又紧迫。然而,其免疫系统的研究因缺乏基因组资源而受到阻碍。在本研究中,我们对未受细菌感染和受到细菌攻击的皱纹盘鲍组织进行了转录组测序。通过对来自十个不同文库的34GB纯净碱基进行从头组装,共获得了138MB的参考转录组,并使用生物学术语(GO和KEGG)进行注释。共有10575个转录本在至少一对比较中表现出差异表达,功能注释突出了与免疫反应、细胞粘附、免疫调节因子、氧化还原分子和线粒体编码基因相关的基因。与其他组织相比,这些基因大多在血细胞中占主导地位。这项工作是识别控制皱纹盘鲍抵抗弧菌感染生存能力的生理特征的先决条件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/5aeef83b350d/pone.0153474.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/087b2d6049ad/pone.0153474.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/29ebea0744a1/pone.0153474.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/d500e04f5143/pone.0153474.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/5aeef83b350d/pone.0153474.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/087b2d6049ad/pone.0153474.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/29ebea0744a1/pone.0153474.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/d500e04f5143/pone.0153474.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7439/4835058/5aeef83b350d/pone.0153474.g004.jpg

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