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Genotyping of and machine learning models to predict the heat resistant phenotype based on genotype.

作者信息

Noh Eun Soo, Subramaniyam Sathiyamoorty, Cho Sunghyun, Kim Young-Ok, Park Choul-Ji, Lee Jeong-Ho, Nam Bo-Hye, Shin Younhee

机构信息

Biotechnology Research Division, National Institute of Fisheries Science, Geoje, Republic of Korea.

Research and Development Center, Yongin-si, Gyeonggi-do, Republic of Korea.

出版信息

Front Genet. 2023 Mar 31;14:1151427. doi: 10.3389/fgene.2023.1151427. eCollection 2023.

DOI:10.3389/fgene.2023.1151427
PMID:37065481
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10102348/
Abstract
摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97b2/10102348/7eaf488bdc6b/fgene-14-1151427-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97b2/10102348/7eaf488bdc6b/fgene-14-1151427-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97b2/10102348/7eaf488bdc6b/fgene-14-1151427-g001.jpg

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本文引用的文献

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Comp Biochem Physiol A Mol Integr Physiol. 2022 Aug;270:111230. doi: 10.1016/j.cbpa.2022.111230. Epub 2022 May 7.
2
SortPred: The first machine learning based predictor to identify bacterial sortases and their classes using sequence-derived information.SortPred：首个基于机器学习的预测工具，可利用序列衍生信息识别细菌分选酶及其类别。
Comput Struct Biotechnol J. 2021 Dec 14;20:165-174. doi: 10.1016/j.csbj.2021.12.014. eCollection 2022.
3
Fast two-stage phasing of large-scale sequence data.
大规模序列数据的快速两阶段相位测定。
Am J Hum Genet. 2021 Oct 7;108(10):1880-1890. doi: 10.1016/j.ajhg.2021.08.005. Epub 2021 Sep 2.
4
Transcriptome expression profiles between diploid and triploid Pacific abalone (Haliotis discus hannai) juveniles in response to acute heat-stress and hypoxia treatments.二倍体和三倍体太平洋鲍（Haliotis discus hannai）幼体在急性热应激和低氧处理下的转录组表达谱。
Mar Genomics. 2021 Jun;57:100820. doi: 10.1016/j.margen.2020.100820. Epub 2020 Oct 1.
5
Genotyping-by-Sequencing of the regional Pacific abalone (Haliotis discus) genomes reveals population structures and patterns of gene flow.基于测序的太平洋鲍（Haliotis discus）区域基因组分型揭示了种群结构和基因流动模式。
PLoS One. 2021 Apr 7;16(4):e0247815. doi: 10.1371/journal.pone.0247815. eCollection 2021.
6
Evolved differences in energy metabolism and growth dictate the impacts of ocean acidification on abalone aquaculture.进化过程中能量代谢和生长的差异决定了海洋酸化对鲍鱼养殖的影响。
Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26513-26519. doi: 10.1073/pnas.2006910117. Epub 2020 Oct 5.
7
Abalone Withering Syndrome Disease Dynamics: Infectious Dose and Temporal Stability in Seawater.鲍鱼萎缩综合征的疾病动态：海水中的感染剂量和时间稳定性
J Aquat Anim Health. 2020 Jun;32(2):83-92. doi: 10.1002/aah.10102. Epub 2020 Apr 27.
8
Metabolomics Adaptation of Juvenile Pacific Abalone Haliotis discus hannai to Heat Stress.代谢组学研究幼体盘鲍（Haliotis discus hannai）对热应激的适应机制。
Sci Rep. 2020 Apr 14;10(1):6353. doi: 10.1038/s41598-020-63122-4.
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Genes (Basel). 2019 Dec 23;11(1):22. doi: 10.3390/genes11010022.
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