Kim Song-Gun, Pheng Sophea, Lee Yong-Jae, Eom Mi Kyung, Shin Dong-Hoon
Biological Resource Center/ Korean Collection for Type Culture (KCTC), Korea Research Institute of Bioscience and Biotechnology, 181 Ipsingil, Jeongeup-si, Jeollabuk-do 56212, Republic of Korea.
University of Science and Technology (UST), 217 Gajeongro, Yuseong, Daejeon 35345, Republic of Korea.
Int J Syst Evol Microbiol. 2016 Aug;66(8):3119-3124. doi: 10.1099/ijsem.0.001155. Epub 2016 May 17.
A Gram-reaction-negative, aerobic, non-spore forming, rod-shaped bacterium motile with a single polar flagellum, designated strain hydD622T, was isolated from the sediment of a tidal flat at Asan Bay, Korea. Strain hydD622T exhibited an agarolytic activity. Comparison of 16S rRNA gene sequences revealed that strain hydD622T was closely related to Agarivorans litoreus KCTC 42116T, Agarivorans albus KCTC 22256T and Agarivorans gilvus KCTC 32555T with similarities of 98.4, 98.0 and 96.5 %, respectively. Strain hydD622T was clustered distantly from the other genera in the family Alteromonadaceae but formed a unique clade within the genus Agarivorans based on the 16S rRNA gene sequence. The DNA-DNA relatedness with Agarivorans litoreus KCTC 42116T and Agarivorans. albus KCTC 22256T was 39.0 and 37.8 %, respectively. The major fatty acids (>10 %) were C16 : 0,C16 : 1ω6c/C16 : 1ω7c and C18 : 1ω6c/C18 : 1ω7c. The respiratory quinone was ubiquinone-8, and the polar lipid profile consisted of phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and an unidentified lipid. The DNA G+C content was 44 mol%. On the basis of physiological, chemotaxonomic and phylogenetic analyses, strain hydD622T represents a novel species within the genus Agarivorans, for which the name Agarivorans aestuarii sp. nov. is proposed. The type strain of Agarivorans aestuarii sp. nov. is hydD622T (=KCTC 32543T=CGMCC 1.12692T).
从韩国牙山湾潮间带沉积物中分离出一株革兰氏阴性、需氧、无芽孢、杆状、具单根极鞭毛运动的细菌,命名为菌株hydD622T。菌株hydD622T表现出琼脂分解活性。16S rRNA基因序列比较显示,菌株hydD622T与海岸琼胶杆菌KCTC 42116T、白色琼胶杆菌KCTC 22256T和吉尔瓦琼胶杆菌KCTC 32555T密切相关,相似性分别为98.4%、98.0%和96.5%。基于16S rRNA基因序列,菌株hydD622T与交替单胞菌科的其他属聚类较远,但在琼胶杆菌属内形成一个独特的分支。与海岸琼胶杆菌KCTC 42116T和白色琼胶杆菌KCTC 22256T的DNA-DNA相关性分别为39.0%和37.8%。主要脂肪酸(>10%)为C16 : 0、C16 : 1ω6c/C16 : 1ω7c和C18 : 1ω6c/C18 : 1ω7c。呼吸醌为泛醌-8,极性脂质谱由磷脂酰乙醇胺、二磷脂酰甘油、磷脂酰甘油和一种未鉴定的脂质组成。DNA G+C含量为44 mol%。基于生理、化学分类和系统发育分析,菌株hydD622T代表琼胶杆菌属内的一个新物种,为此提出新名称河口琼胶杆菌(Agarivorans aestuarii sp. nov.)。河口琼胶杆菌的模式菌株为hydD622T(=KCTC 32543T=CGMCC 1.12692T)。