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食藻弧菌新种,一种从海螺肠道菌群中分离出的能同化藻酸盐和琼脂糖的细菌。

Vibrio algivorus sp. nov., an alginate- and agarose-assimilating bacterium isolated from the gut flora of a turban shell marine snail.

作者信息

Doi Hidetaka, Chinen Akito, Fukuda Hiroo, Usuda Yoshihiro

机构信息

Process Development Laboratories, Research Institute for Bioscience Products & Fine Chemicals, Ajinomoto Co., Inc., 1-1 Suzuki-cho, Kawasaki-ku, Kawasaki-shi, 210-8681 Kanagawa, Japan.

Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, 113-0033 Tokyo, Japan.

出版信息

Int J Syst Evol Microbiol. 2016 Aug;66(8):3164-3169. doi: 10.1099/ijsem.0.001165. Epub 2016 May 19.

Abstract

An agarose- and alginate-assimilating, Gram-reaction-negative, non-motile, rod-shaped bacterium, designated strain SA2T, was isolated from the gut of a turban shell sea snail (Turbo cornutus) collected near Noto Peninsula, Ishikawa Prefecture, Japan. The 16S rRNA gene sequence of strain SA2T was 99.59 % identical to that of Vibrio rumoiensis DSM 19141T and 98.19 % identical to that of Vibrio litoralis DSM 17657T. This suggested that strain SA2T could be a subspecies of V. rumoiensis or V. litoralis. However, DNA-DNA hybridization results showed only 37.5 % relatedness to DSM 19141T and 44.7 % relatedness to DSM 17657T, which was far lower than the 70 % widely accepted to define common species. Strain SA2T could assimilate agarose as a sole carbon source, whereas strains DSM 19141T and DSM 17657T could not assimilate it at all. Furthermore, results using API 20NE and API ZYM kits indicated that their enzymic and physiological phenotypes were also different. These results suggested that strain SA2T represented a novel species within the genus Vibrio. The major isoprenoid quinone in SA2T was Q-8, and its major polar lipids were phosphatidylethanolamine and phosphatidylglycerol. The major fatty acids were summed feature 3, (comprising C16 : 1ω6c and/or C16 : 1ω7c), C16 : 0, and summed feature 8 (comprising C18 : 1ω6c and/or C18 : 1ω7c). The DNA G+C content of SA2T was 40.7 mol%. The name proposed for this novel species of the genus Vibrio is Vibrio algivorus sp. nov., with the type strain designated SA2T (=DSM 29824T=NBRC 111146T).

摘要

从日本石川县能登半岛附近采集的头巾螺(Turbo cornutus)肠道中分离出一株能同化琼脂糖和藻酸盐、革兰氏反应阴性、无运动性、杆状的细菌,命名为菌株SA2T。菌株SA2T的16S rRNA基因序列与鲁氏弧菌DSM 19141T的序列相似度为99.59%,与沿岸弧菌DSM 17657T的序列相似度为98.19%。这表明菌株SA2T可能是鲁氏弧菌或沿岸弧菌的一个亚种。然而,DNA-DNA杂交结果显示,它与DSM 19141T的亲缘关系仅为37.5%,与DSM 17657T的亲缘关系为44.7%,远低于定义常见物种所广泛接受的70%。菌株SA2T能够将琼脂糖作为唯一碳源进行同化,而菌株DSM 19141T和DSM 17657T根本无法同化。此外,使用API 20NE和API ZYM试剂盒的结果表明,它们的酶学和生理表型也不同。这些结果表明菌株SA2T代表了弧菌属中的一个新物种。SA2T中的主要类异戊二烯醌为Q-8,其主要极性脂质为磷脂酰乙醇胺和磷脂酰甘油。主要脂肪酸为总和特征3(包含C16 : 1ω6c和/或C16 : 1ω7c)、C16 : 0和总和特征8(包含C18 : 1ω6c和/或C18 : 1ω7c)。SA2T的DNA G+C含量为40.7 mol%。这个弧菌属新物种提议命名为食藻弧菌(Vibrio algivorus sp. nov.),模式菌株为SA2T(=DSM 29824T=NBRC 111146T)。

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