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中华花龟转录组的从头组装与特征分析:长寿相关基因的存在

De novo assembly and characterization of the Chinese three-keeled pond turtle (Mauremys reevesii) transcriptome: presence of longevity-related genes.

作者信息

Yin Huazong, Nie Liuwang, Zhao Feifei, Zhou Huaxing, Li Haifeng, Dong Xianmei, Zhang Huanhuan, Wang Yuqin, Shi Qiong, Li Jun

机构信息

College of Life Science, Anhui Normal University, Provincial Key Lab of the Conservation and Exploitation Research of Biological Resources in Anhui , Wuhu, Anhui , China.

出版信息

PeerJ. 2016 May 24;4:e2062. doi: 10.7717/peerj.2062. eCollection 2016.

Abstract

Mauremys reevesii (Geoemydidae) is one of the most common and widespread semi-aquatic turtles in East Asia. The unusually long lifespan of some individuals makes this turtle species a potentially useful model organism for studying the molecular basis of longevity. In this study, pooled total RNA extracted from liver, spleen and skeletal-muscle of three adult individuals were sequenced using Illumina Hiseq 2500 platform. A set of telomere-related genes were found in the transcriptome, including tert, tep1, and six shelterin complex proteins coding genes (trf1, trf2, tpp1, pot1, tin2 and rap1). These genes products protect chromosome ends from deterioration and therefore significantly contribute to turtle longevity. The transcriptome data generated in this study provides a comprehensive reference for future molecular studies in the turtle.

摘要

中华草龟(地龟科)是东亚地区最常见且分布最广的半水栖龟类之一。一些个体超长的寿命使得该龟种成为研究长寿分子基础的潜在有用模式生物。在本研究中,从三只成年个体的肝脏、脾脏和骨骼肌中提取的混合总RNA使用Illumina Hiseq 2500平台进行测序。在转录组中发现了一组端粒相关基因,包括tert、tep1以及六个编码端粒保护蛋白复合体的基因(trf1、trf2、tpp1、pot1、tin2和rap1)。这些基因产物可保护染色体末端不退化,因此对龟的长寿有显著贡献。本研究生成的转录组数据为龟类未来的分子研究提供了全面的参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2100/4888314/ae3bfcc1b52a/peerj-04-2062-g001.jpg

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