Farda Beatrice, Djebaili Rihab, Del Gallo Maddalena, Ercole Claudia, Bellatreccia Fabio, Pellegrini Marika
Department of Life, Health and Environmental Sciences, University of L'Aquila, Via Vetoio, Coppito, 67100 L'Aquila, Italy.
Dipartimento di Scienze, Università Roma Tre, Largo San Leonardo Murialdo 1, 00146 Roma, Italy.
Biology (Basel). 2022 Aug 11;11(8):1204. doi: 10.3390/biology11081204.
The present study explored the microbial diversity of black deposits found in the "Infernaccio" gorge. X-ray Powdered Diffraction (XRPD) was used to investigate the crystallinity of the samples and to identify the minerals. Scanning electron microscope and energy-dispersive X-ray spectroscopy (SEM-EDS) were used to detect the bacterial imprints, analyze microbe-mineral interactions, and highlight the chemical element distribution in the black deposits. 16S rRNA gene metabarcoding allowed the study of Archaea and Bacteria communities. Mn-oxide-solubilizing isolates were also obtained and characterized by culturable and molecular approaches. The multidisciplinary approach showed the occurrence of deposits composed of birnessite, diopside, halloysite, and leucite. Numerous bacterial imprints confirmed the role of microorganisms in forming these deposits. The Bacteria and Archaea communities associated with these deposits and runoff waters are dynamic and shaped by seasonal changes. The uncultured and unknown taxa are the most common and abundant. These amplicon sequence variants (ASVs) were mainly assigned to Proteobacteria and Bacteroidetes phyla. Six isolates showed interesting Mn solubilization abilities under microaerophilic conditions. Molecular characterization associated isolates to , , , and genera. The findings enriched our knowledge of geomicrobiological aspects of one of the Earth's hidden habitats. The study also unveiled the potential of this environment as an isolation source of biotechnologically relevant bacteria.
本研究探索了在“Infernaccio”峡谷中发现的黑色沉积物的微生物多样性。采用X射线粉末衍射(XRPD)研究样品的结晶度并鉴定矿物。利用扫描电子显微镜和能量色散X射线光谱(SEM-EDS)检测细菌印记、分析微生物与矿物的相互作用,并突出黑色沉积物中的化学元素分布。16S rRNA基因宏条形码技术用于研究古菌和细菌群落。还通过可培养和分子方法获得并表征了锰氧化物溶解菌株。多学科方法表明存在由水钠锰矿、透辉石、埃洛石和白榴石组成的沉积物。大量细菌印记证实了微生物在形成这些沉积物中的作用。与这些沉积物和径流相关的细菌和古菌群落是动态的,受季节变化影响。未培养和未知的分类群最为常见且数量丰富。这些扩增子序列变体(ASV)主要归属于变形菌门和拟杆菌门。六株菌株在微需氧条件下表现出有趣的锰溶解能力。分子表征将菌株与 、 、 和 属相关联。这些发现丰富了我们对地球隐秘栖息地之一的地球微生物学方面的认识。该研究还揭示了这种环境作为具有生物技术相关性细菌的分离来源的潜力。