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基于MRI数据的帕金森病联合特征-样本选择与稳健诊断

Joint feature-sample selection and robust diagnosis of Parkinson's disease from MRI data.

作者信息

Adeli Ehsan, Shi Feng, An Le, Wee Chong-Yaw, Wu Guorong, Wang Tao, Shen Dinggang

机构信息

Department of Radiology and BRIC, University of North Carolina-Chapel Hill, NC 27599, USA.

Department of Radiology and BRIC, University of North Carolina-Chapel Hill, NC 27599, USA; Department of Biomedical Engineering, National University of Singapore, Singapore.

出版信息

Neuroimage. 2016 Nov 1;141:206-219. doi: 10.1016/j.neuroimage.2016.05.054. Epub 2016 Jun 10.

Abstract

Parkinson's disease (PD) is an overwhelming neurodegenerative disorder caused by deterioration of a neurotransmitter, known as dopamine. Lack of this chemical messenger impairs several brain regions and yields various motor and non-motor symptoms. Incidence of PD is predicted to double in the next two decades, which urges more research to focus on its early diagnosis and treatment. In this paper, we propose an approach to diagnose PD using magnetic resonance imaging (MRI) data. Specifically, we first introduce a joint feature-sample selection (JFSS) method for selecting an optimal subset of samples and features, to learn a reliable diagnosis model. The proposed JFSS model effectively discards poor samples and irrelevant features. As a result, the selected features play an important role in PD characterization, which will help identify the most relevant and critical imaging biomarkers for PD. Then, a robust classification framework is proposed to simultaneously de-noise the selected subset of features and samples, and learn a classification model. Our model can also de-noise testing samples based on the cleaned training data. Unlike many previous works that perform de-noising in an unsupervised manner, we perform supervised de-noising for both training and testing data, thus boosting the diagnostic accuracy. Experimental results on both synthetic and publicly available PD datasets show promising results. To evaluate the proposed method, we use the popular Parkinson's progression markers initiative (PPMI) database. Our results indicate that the proposed method can differentiate between PD and normal control (NC), and outperforms the competing methods by a relatively large margin. It is noteworthy to mention that our proposed framework can also be used for diagnosis of other brain disorders. To show this, we have also conducted experiments on the widely-used ADNI database. The obtained results indicate that our proposed method can identify the imaging biomarkers and diagnose the disease with favorable accuracies compared to the baseline methods.

摘要

帕金森病(PD)是一种由神经递质多巴胺退化引起的严重神经退行性疾病。这种化学信使的缺乏会损害多个脑区,并产生各种运动和非运动症状。预计在未来二十年中,帕金森病的发病率将翻倍,这促使更多研究聚焦于其早期诊断和治疗。在本文中,我们提出了一种利用磁共振成像(MRI)数据诊断帕金森病的方法。具体而言,我们首先引入一种联合特征 - 样本选择(JFSS)方法来选择样本和特征的最优子集,以学习可靠的诊断模型。所提出的JFSS模型有效地舍弃了不良样本和无关特征。结果,所选特征在帕金森病特征描述中发挥重要作用,这将有助于识别与帕金森病最相关和关键的成像生物标志物。然后,提出了一个稳健的分类框架,以同时对所选特征和样本子集进行去噪,并学习分类模型。我们的模型还可以基于清理后的训练数据对测试样本进行去噪。与许多以往以无监督方式进行去噪的工作不同,我们对训练和测试数据都进行监督去噪,从而提高诊断准确性。在合成和公开可用的帕金森病数据集上的实验结果显示出了有前景的结果。为了评估所提出的方法,我们使用了广受欢迎的帕金森病进展标志物倡议(PPMI)数据库。我们的结果表明,所提出的方法能够区分帕金森病和正常对照(NC),并且比竞争方法有较大幅度的优势。值得一提的是,我们提出的框架也可用于诊断其他脑部疾病。为了证明这一点,我们还在广泛使用的ADNI数据库上进行了实验。获得的结果表明,与基线方法相比,我们提出的方法能够识别成像生物标志物并以良好的准确率诊断疾病。

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