使用Bio3D-web对蛋白质结构集合进行在线交互式分析。
Online interactive analysis of protein structure ensembles with Bio3D-web.
作者信息
Skjærven Lars, Jariwala Shashank, Yao Xin-Qiu, Grant Barry J
机构信息
Department of Biomedicine, University of Bergen, Bergen, Norway.
Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.
出版信息
Bioinformatics. 2016 Nov 15;32(22):3510-3512. doi: 10.1093/bioinformatics/btw482. Epub 2016 Jul 16.
UNLABELLED
Bio3D-web is an online application for analyzing the sequence, structure and conformational heterogeneity of protein families. Major functionality is provided for identifying protein structure sets for analysis, their alignment and refined structure superposition, sequence and structure conservation analysis, mapping and clustering of conformations and the quantitative comparison of their predicted structural dynamics.
AVAILABILITY
Bio3D-web is based on the Bio3D and Shiny R packages. All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web CONTACT: bjgrant@umich.edu or lars.skjarven@uib.no.
未标注
Bio3D-web是一个用于分析蛋白质家族序列、结构和构象异质性的在线应用程序。其主要功能包括识别用于分析的蛋白质结构集、进行结构比对和精细结构叠加、序列和结构保守性分析、构象的映射和聚类以及预测结构动力学的定量比较。
可用性
Bio3D-web基于Bio3D和Shiny R软件包。支持所有主流浏览器，完整源代码可在http://thegrantlab.org/bio3d-web上根据GPL2许可获取。联系方式：bjgrant@umich.edu或lars.skjarven@uib.no。
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