• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

IMA基因组-F 6:褐环粘盖牛肝菌、微小角囊菌、肥胖角囊菌、落叶松内座壳、波兰内座壳和弗雷青霉DAOMC 242723的基因组序列草图

IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723.

作者信息

Wingfield Brenda D, Ambler Jon M, Coetzee Martin P A, de Beer Z Wilhelm, Duong Tuan A, Joubert Fourie, Hammerbacher Almuth, McTaggart Alistair R, Naidoo Kershney, Nguyen Hai D T, Ponomareva Ekaterina, Santana Quentin S, Seifert Keith A, Steenkamp Emma T, Trollip Conrad, van der Nest Magriet A, Visagie Cobus M, Wilken P Markus, Wingfield Michael J, Yilmaz Neriman

机构信息

Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028 South Africa;

Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria, 0028 South Africa.

出版信息

IMA Fungus. 2016 Jun;7(1):217-27. doi: 10.5598/imafungus.2016.07.01.11. Epub 2016 Jun 21.

DOI:10.5598/imafungus.2016.07.01.11
PMID:27433447
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4941685/
Abstract

The genomes of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica, and Penicillium freii DAOMC 242723 are presented in this genome announcement. These six genomes are from plant pathogens and otherwise economically important fungal species. The genome sizes range from 21 Mb in the case of Ceratocystiopsis minuta to 58 Mb for the basidiomycete Armillaria fuscipes. These genomes include the first reports of genomes for the genus Endoconidiophora. The availability of these genome data will provide opportunities to resolve longstanding questions regarding the taxonomy of species in these genera. In addition these genome sequences through comparative studies with closely related organisms will increase our understanding of how these pathogens cause disease.

摘要

本基因组公告展示了黑柄蜜环菌、微小拟长喙壳菌、肥拟长喙壳菌、落叶松内座壳菌、波兰内座壳菌和弗雷青霉DAOMC 242723的基因组。这六个基因组来自植物病原体及其他具有经济重要性的真菌物种。基因组大小范围从微小拟长喙壳菌的21 Mb到担子菌黑柄蜜环菌的58 Mb。这些基因组包括内座壳菌属基因组的首次报道。这些基因组数据的可得性将为解决有关这些属中物种分类的长期问题提供机会。此外,通过与亲缘关系密切的生物体进行比较研究,这些基因组序列将增进我们对这些病原体如何致病的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f536/4941685/0f6c953aa73f/ima-7-1-217-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f536/4941685/0f6c953aa73f/ima-7-1-217-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f536/4941685/0f6c953aa73f/ima-7-1-217-g001.jpg

相似文献

1
IMA Genome-F 6: Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723.IMA基因组-F 6:褐环粘盖牛肝菌、微小角囊菌、肥胖角囊菌、落叶松内座壳、波兰内座壳和弗雷青霉DAOMC 242723的基因组序列草图
IMA Fungus. 2016 Jun;7(1):217-27. doi: 10.5598/imafungus.2016.07.01.11. Epub 2016 Jun 21.
2
IMA Genome-F 5: Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum,Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum.IMA基因组-F 5:桉材色二孢、古巴金孢壳、次生古巴金孢壳、绿生戴维逊盘菌、温和镰刀菌、香拟盘多毛孢、北欧青霉和香蕉拟茎点霉的基因组序列草图
IMA Fungus. 2015 Dec;6(2):493-506. doi: 10.5598/imafungus.2015.06.02.13. Epub 2015 Dec 1.
3
IMA Genome-F 8: Draft genome of , , and .IMA基因组-F 8:[具体物种1]、[具体物种2]、[具体物种3]和[具体物种4]的基因组草图
IMA Fungus. 2017 Dec;8(2):385-396. doi: 10.5598/imafungus.2017.08.02.10. Epub 2017 Nov 21.
4
IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata.IMA基因组-F 4:南非金孢壳菌、瘤座壳菌、奈加马镰刀菌、伦德伯格长喙壳菌、茎生黏团菌、艾氏叶点霉和斑点拟茎点霉的基因组序列草图
IMA Fungus. 2015 Jun;6(1):233-48. doi: 10.5598/imafungus.2015.06.01.15. Epub 2015 Jun 22.
5
IMA Genome-F 3: Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila.IMA基因组-F 3:鹅膏菌、白腐色二孢菌、轮枝镰孢菌、阿曼胡氏菌、长喙壳菌、西多红脐鳞、嗜棘盘核盘菌的基因组草图
IMA Fungus. 2014 Dec;5(2):473-86. doi: 10.5598/imafungus.2014.05.02.11. Epub 2014 Dec 16.
6
Phenotypic and DNA sequence data comparisons reveal three discrete species in the Ceratocystis polonica species complex.表型和DNA序列数据比较揭示了波兰长喙壳菌物种复合体中的三个不同物种。
Mycol Res. 2005 Oct;109(Pt 10):1137-48. doi: 10.1017/s095375620500362x.
7
Species Delimitation and Host Specialization of Ceratocystis laricicola and C. polonica to Larch and Spruce.落叶松长喙壳菌和波兰长喙壳菌对落叶松和云杉的物种界定及寄主专一性
Plant Dis. 2002 Apr;86(4):418-422. doi: 10.1094/PDIS.2002.86.4.418.
8
IMA Genome-F 2: Ceratocystis manginecans, Ceratocystis moniliformis, Diplodia sapinea: Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis.IMA Genome-F 2:突脐蔗黑粉菌、串珠镰孢菌、松色二孢菌:松色二孢菌、突脐蔗黑粉菌和串珠镰孢菌的基因组草案序列。
IMA Fungus. 2014 Jun;5(1):135-40. doi: 10.5598/imafungus.2014.05.01.13. Epub 2014 Jun 19.
9
IMA Genome-F 11: Draft genome sequences of and and genome annotation for .IMA基因组-F 11:[具体物种1]和[具体物种2]的基因组序列草图以及[具体物种3]的基因组注释
IMA Fungus. 2019 Sep 13;10:13. doi: 10.1186/s43008-019-0013-7. eCollection 2019.
10
De novo sequencing, assembly and functional annotation of Armillaria borealis genome.北方蜜环菌基因组的从头测序、组装及功能注释
BMC Genomics. 2020 Sep 10;21(Suppl 7):534. doi: 10.1186/s12864-020-06964-6.

引用本文的文献

1
Phylogeny and species diversity of in China based on morphological, mating test, and GCPSR criteria.基于形态学、交配试验和GCPSR标准的中国[具体对象未明确]的系统发育和物种多样性。
Mycology. 2024 Nov 13;16(2):777-811. doi: 10.1080/21501203.2024.2404121. eCollection 2025.
2
Whole genome sequencing and analysis of Armillaria gallica Jzi34 symbiotic with Gastrodia elata.全基因组测序和分析与天麻共生的香菇 Jzi34。
BMC Genomics. 2023 May 23;24(1):275. doi: 10.1186/s12864-023-09384-4.
3
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Family.

本文引用的文献

1
Discrimination of some African Armillaria species by isozyme electrophoretic analysis.通过同工酶电泳分析鉴别一些非洲蜜环菌物种。
New Phytol. 1994 Sep;128(1):135-143. doi: 10.1111/j.1469-8137.1994.tb03996.x.
2
Draft Genome Sequence of the Dimorphic Fungus Sporothrix pallida, a Nonpathogenic Species Belonging to Sporothrix, a Genus Containing Agents of Human and Feline Sporotrichosis.苍白孢子丝菌的基因组序列草图,苍白孢子丝菌是一种双态真菌,属于孢子丝菌属,该属包含引起人类和猫孢子丝菌病的病原体。
Genome Announc. 2016 Mar 31;4(2):e00184-16. doi: 10.1128/genomeA.00184-16.
3
IMA Genome-F 5: Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum,Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum.
基于计算机的方法识别 TF 结合位点:对 科真菌物种 BUSCO 基因调控区的分析。
Genes (Basel). 2023 Mar 31;14(4):848. doi: 10.3390/genes14040848.
4
IMA genome‑F17 : Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina.IMA基因组-F17:来自津巴布韦的一种蜜环菌、哥伦比亚长喙壳菌、毁灭炭疽菌、寄生白纹羽病菌、两种小核盘菌基因组、来自大麦草的4个网斑病菌分离株的短读长基因组组装和注释,以及玉蜀黍尾孢菌的长读长基因组组装。
IMA Fungus. 2022 Nov 21;13(1):19. doi: 10.1186/s43008-022-00104-3.
5
Generic boundaries in the reconsidered and revised.通用边界在重新考虑和修订中。 (不过原英文表述不太完整准确,正常完整句子可能会更清晰表意)
Stud Mycol. 2022 Jul;101:57-120. doi: 10.3114/sim.2022.101.02. Epub 2022 Mar 30.
6
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae.儿茶酚双加氧酶介导的酚类降解与坏死营养型生活方式的尾孢菌科中的致病真菌有关。
G3 (Bethesda). 2022 Mar 4;12(3). doi: 10.1093/g3journal/jkac008.
7
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.与澳大利亚东南部松树皮甲虫和受侵染松树相关的长喙壳类真菌,包括新物种大颈长喙壳菌。
IMA Fungus. 2021 Sep 1;12(1):24. doi: 10.1186/s43008-021-00076-w.
8
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae.长喙壳科中麦角甾醇生物合成途径的特征分析
J Fungi (Basel). 2021 Mar 22;7(3):237. doi: 10.3390/jof7030237.
9
The Mitogenomes of and and Comparisons With Other Members of the Ophiostomatales.[物种名称1]和[物种名称2]的线粒体基因组及其与长喙壳目其他成员的比较。
Front Microbiol. 2021 Feb 10;12:618649. doi: 10.3389/fmicb.2021.618649. eCollection 2021.
10
Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere.北半球蜜环菌属真菌的流行病学、生物相互作用及生物防治
Pathogens. 2021 Jan 16;10(1):76. doi: 10.3390/pathogens10010076.
IMA基因组-F 5:桉材色二孢、古巴金孢壳、次生古巴金孢壳、绿生戴维逊盘菌、温和镰刀菌、香拟盘多毛孢、北欧青霉和香蕉拟茎点霉的基因组序列草图
IMA Fungus. 2015 Dec;6(2):493-506. doi: 10.5598/imafungus.2015.06.02.13. Epub 2015 Dec 1.
4
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose.长喙壳科中的腐生真菌和致病真菌在代谢植物源蔗糖的能力上存在差异。
BMC Evol Biol. 2015 Dec 7;15:273. doi: 10.1186/s12862-015-0550-7.
5
IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata.IMA基因组-F 4:南非金孢壳菌、瘤座壳菌、奈加马镰刀菌、伦德伯格长喙壳菌、茎生黏团菌、艾氏叶点霉和斑点拟茎点霉的基因组序列草图
IMA Fungus. 2015 Jun;6(1):233-48. doi: 10.5598/imafungus.2015.06.01.15. Epub 2015 Jun 22.
6
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO:利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
7
Unisexual reproduction in Huntiella moniliformis.念珠状亨氏菌中的孤雌生殖。
Fungal Genet Biol. 2015 Jul;80:1-9. doi: 10.1016/j.fgb.2015.04.008. Epub 2015 Apr 21.
8
IMA Genome-F 3: Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila.IMA基因组-F 3:鹅膏菌、白腐色二孢菌、轮枝镰孢菌、阿曼胡氏菌、长喙壳菌、西多红脐鳞、嗜棘盘核盘菌的基因组草图
IMA Fungus. 2014 Dec;5(2):473-86. doi: 10.5598/imafungus.2014.05.02.11. Epub 2014 Dec 16.
9
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.通过牛舌菌和托氏柱锈菌的基因组序列揭示伞菌目新木材腐朽机制的进化
Fungal Genet Biol. 2015 Mar;76:78-92. doi: 10.1016/j.fgb.2015.02.002. Epub 2015 Feb 12.
10
Identification and nomenclature of the genus Penicillium.青霉属的鉴定与命名
Stud Mycol. 2014 Jun;78:343-71. doi: 10.1016/j.simyco.2014.09.001.