Department of Computational and Applied Mathematics, Rice University, St. Housten, TX
Department of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, LA.
Mol Biol Evol. 2016 Dec;33(12):3314-3316. doi: 10.1093/molbev/msw196. Epub 2016 Sep 15.
Modern phylogenomic analyses often result in large collections of phylogenetic trees representing uncertainty in individual gene trees, variation across genes, or both. Extracting phylogenetic signal from these tree sets can be challenging, as they are difficult to visualize, explore, and quantify. To overcome some of these challenges, we have developed TreeScaper, an application for tree set visualization as well as the identification of distinct phylogenetic signals. GUI and command-line versions of TreeScaper and a manual with tutorials can be downloaded from https://github.com/whuang08/TreeScaper/releases TreeScaper is distributed under the GNU General Public License.
现代系统基因组学分析通常会产生大量的系统发育树集合，这些集合代表了单个基因树的不确定性、基因间的变异或两者兼而有之。从这些树集合中提取系统发育信号可能具有挑战性，因为它们难以可视化、探索和量化。为了克服其中的一些挑战，我们开发了 TreeScaper，这是一种用于树集合可视化以及识别不同系统发育信号的应用程序。TreeScaper 的图形用户界面 (GUI) 和命令行版本以及带有教程的手册可从 https://github.com/whuang08/TreeScaper/releases 下载。TreeScaper 根据 GNU 通用公共许可证分发。
