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昼夜节律基因Arntl2是雌激素受体阴性乳腺癌的转移易感基因。

The Circadian Rhythm Gene Arntl2 Is a Metastasis Susceptibility Gene for Estrogen Receptor-Negative Breast Cancer.

作者信息

Ha Ngoc-Han, Long Jirong, Cai Qiuyin, Shu Xiao Ou, Hunter Kent W

机构信息

Laboratory of Cancer Biology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

Division of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.

出版信息

PLoS Genet. 2016 Sep 22;12(9):e1006267. doi: 10.1371/journal.pgen.1006267. eCollection 2016 Sep.

DOI:10.1371/journal.pgen.1006267
PMID:27656887
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5033489/
Abstract

Breast cancer mortality is primarily due to metastasis rather than primary tumors, yet relatively little is understood regarding the etiology of metastatic breast cancer. Previously, using a mouse genetics approach, we demonstrated that inherited germline polymorphisms contribute to metastatic disease, and that these single nucleotide polymorphisms (SNPs) could be used to predict outcome in breast cancer patients. In this study, a backcross between a highly metastatic (FVB/NJ) and low metastatic (MOLF/EiJ) mouse strain identified Arntl2, a gene encoding a circadian rhythm transcription factor, as a metastasis susceptibility gene associated with progression, specifically in estrogen receptor-negative breast cancer patients. Integrated whole genome sequence analysis with DNase hypersensitivity sites reveals SNPs in the predicted promoter of Arntl2. Using CRISPR/Cas9-mediated substitution of the MOLF promoter, we demonstrate that the SNPs regulate Arntl2 transcription and affect metastatic burden. Finally, analysis of SNPs associated with ARNTL2 expression in human breast cancer patients revealed reproducible associations of ARNTL2 expression quantitative trait loci (eQTL) SNPs with disease-free survival, consistent with the mouse studies.

摘要

乳腺癌死亡率主要归因于转移而非原发性肿瘤,然而对于转移性乳腺癌的病因了解相对较少。此前,我们采用小鼠遗传学方法证明,遗传种系多态性会导致转移性疾病,并且这些单核苷酸多态性(SNP)可用于预测乳腺癌患者的预后。在本研究中,一种高转移性(FVB/NJ)和低转移性(MOLF/EiJ)小鼠品系之间的回交鉴定出Arntl2,这是一个编码昼夜节律转录因子的基因,是与进展相关的转移易感基因,特别是在雌激素受体阴性的乳腺癌患者中。将全基因组序列分析与DNase超敏位点整合,揭示了Arntl2预测启动子中的SNP。使用CRISPR/Cas9介导的MOLF启动子替换,我们证明这些SNP调节Arntl2转录并影响转移负担。最后,对人类乳腺癌患者中与ARNTL2表达相关的SNP进行分析,发现ARNTL2表达数量性状位点(eQTL)SNP与无病生存期存在可重复的关联,这与小鼠研究结果一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/b5fff9e7f3e0/pgen.1006267.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/421a1367c16e/pgen.1006267.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/79a7a627725c/pgen.1006267.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/c492f5884c2c/pgen.1006267.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/5604874edec1/pgen.1006267.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/b5fff9e7f3e0/pgen.1006267.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/421a1367c16e/pgen.1006267.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/79a7a627725c/pgen.1006267.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/c492f5884c2c/pgen.1006267.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/5604874edec1/pgen.1006267.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/528e/5033489/b5fff9e7f3e0/pgen.1006267.g005.jpg

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3
PARP1- and CTCF-Mediated Interactions between Active and Repressed Chromatin at the Lamina Promote Oscillating Transcription.
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Resf1 is a compound G4 quadruplex-associated tumor suppressor for triple negative breast cancer.Resf1 是一种与 G4 四链体相关的抑癌化合物,可用于三阴性乳腺癌。
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