• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

原衣壳蛋白酶、噬菌体尾管和细菌VI型分泌系统的管的共同进化起源

Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.

作者信息

Fokine Andrei, Rossmann Michael G

机构信息

Department of Biological Sciences, Hockmeyer Hall of Structural Biology, Purdue University, 240 South Martin Jischke Drive, West Lafayette, IN 47907, USA.

出版信息

Structure. 2016 Nov 1;24(11):1928-1935. doi: 10.1016/j.str.2016.08.013. Epub 2016 Sep 22.

DOI:10.1016/j.str.2016.08.013
PMID:27667692
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5093050/
Abstract

Many large viruses, including tailed dsDNA bacteriophages and herpesviruses, assemble their capsids via formation of precursors, called procapsids or proheads. The prohead has an internal core, made of scaffolding proteins, and an outer shell, formed by the major capsid protein. The prohead usually contains a protease, which is activated during capsid maturation to destroy the inner core and liberate space for the genome. Here, we report a 2.0 Å resolution structure of the pentameric procapsid protease of bacteriophage T4, gene product (gp)21. The structure corresponds to the enzyme's pre-active state in which its N-terminal region blocks the catalytic center, demonstrating that the activation mechanism involves self-cleavage of nine N-terminal residues. We describe similarities and differences between T4 gp21 and related herpesvirus proteases. We found that gp21 and the herpesvirus proteases have similarity with proteins forming the tubes of phage tails and bacterial type VI secretion systems, suggesting their common evolutionary origin.

摘要

许多大型病毒,包括有尾双链DNA噬菌体和疱疹病毒,通过形成称为前衣壳或原头部的前体来组装它们的衣壳。前头部有一个由支架蛋白构成的内部核心和一个由主要衣壳蛋白形成的外壳。前头部通常含有一种蛋白酶,该蛋白酶在衣壳成熟过程中被激活,以破坏内部核心并为基因组释放空间。在此,我们报道了噬菌体T4的五聚体前衣壳蛋白酶基因产物(gp)21的分辨率为2.0 Å的结构。该结构对应于酶的前活性状态,其中其N端区域阻断催化中心,表明激活机制涉及九个N端残基的自我切割。我们描述了T4 gp21与相关疱疹病毒蛋白酶之间的异同。我们发现gp21和疱疹病毒蛋白酶与形成噬菌体尾部管和细菌VI型分泌系统的蛋白质具有相似性,表明它们有共同的进化起源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/55567baf1682/nihms814529f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/3b6f04b7f988/nihms814529f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/86b4a8a74818/nihms814529f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/ae0b638c213c/nihms814529f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/54e06dcd3eeb/nihms814529f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/9aed5fb12c8d/nihms814529f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/55567baf1682/nihms814529f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/3b6f04b7f988/nihms814529f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/86b4a8a74818/nihms814529f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/ae0b638c213c/nihms814529f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/54e06dcd3eeb/nihms814529f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/9aed5fb12c8d/nihms814529f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80d3/5093050/55567baf1682/nihms814529f6.jpg

相似文献

1
Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems.原衣壳蛋白酶、噬菌体尾管和细菌VI型分泌系统的管的共同进化起源
Structure. 2016 Nov 1;24(11):1928-1935. doi: 10.1016/j.str.2016.08.013. Epub 2016 Sep 22.
2
Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease.双链DNA噬菌体原头部蛋白酶与疱疹病毒蛋白酶同源。
Protein Sci. 2004 Aug;13(8):2260-9. doi: 10.1110/ps.04726004.
3
Capsids and Portals Influence Each Other's Conformation During Assembly and Maturation.衣壳和门户在组装和成熟过程中相互影响其构象。
J Mol Biol. 2020 Mar 27;432(7):2015-2029. doi: 10.1016/j.jmb.2020.01.022. Epub 2020 Feb 6.
4
A Molecular Staple: D-Loops in the I Domain of Bacteriophage P22 Coat Protein Make Important Intercapsomer Contacts Required for Procapsid Assembly.一种分子主链:噬菌体P22外壳蛋白I结构域中的D环形成原衣壳组装所需的重要衣壳间接触。
J Virol. 2015 Oct;89(20):10569-79. doi: 10.1128/JVI.01629-15. Epub 2015 Aug 12.
5
Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.通过冷冻电镜重建得到的多态原子模型揭示噬菌体T7的衣壳扩张机制
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):E4606-14. doi: 10.1073/pnas.1407020111. Epub 2014 Oct 13.
6
The amazing HK97 fold: versatile results of modest differences.惊人的 HK97 折叠:微小差异带来多样结果。
Curr Opin Virol. 2019 Jun;36:9-16. doi: 10.1016/j.coviro.2019.02.001. Epub 2019 Mar 8.
7
The Apical Region of the Herpes Simplex Virus Major Capsid Protein Promotes Capsid Maturation.单纯疱疹病毒主要衣壳蛋白的顶部区域促进衣壳成熟。
J Virol. 2018 Aug 29;92(18). doi: 10.1128/JVI.00821-18. Print 2018 Sep 15.
8
Assembly of the herpes simplex virus capsid: characterization of intermediates observed during cell-free capsid formation.单纯疱疹病毒衣壳的组装:无细胞衣壳形成过程中观察到的中间体的特征
J Mol Biol. 1996 Nov 1;263(3):432-46. doi: 10.1006/jmbi.1996.0587.
9
The herpes simplex virus procapsid: structure, conformational changes upon maturation, and roles of the triplex proteins VP19c and VP23 in assembly.单纯疱疹病毒原衣壳:结构、成熟过程中的构象变化以及三联体蛋白VP19c和VP23在组装中的作用。
J Mol Biol. 1996 Nov 1;263(3):447-62. doi: 10.1016/s0022-2836(96)80018-0.
10
The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system.λ噬菌体主要尾部蛋白结构揭示了长尾噬菌体和VI型细菌分泌系统的共同进化。
Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4160-5. doi: 10.1073/pnas.0900044106. Epub 2009 Feb 27.

引用本文的文献

1
Origin, Evolution and Diversity of φ29-like Phages-Review and Bioinformatic Analysis.φ29 样噬菌体的起源、进化与多样性——综述与生物信息学分析。
Int J Mol Sci. 2024 Oct 9;25(19):10838. doi: 10.3390/ijms251910838.
2
Phenotypic characterization and genomic analysis of phage.噬菌体的表型特征及基因组分析
Curr Res Food Sci. 2024 Apr 27;8:100748. doi: 10.1016/j.crfs.2024.100748. eCollection 2024.
3
Bacteriophage T4 Head: Structure, Assembly, and Genome Packaging.T4 噬菌体头部:结构、组装和基因组包装。

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Structure of the T4 baseplate and its function in triggering sheath contraction.T4 基板的结构及其在触发鞘收缩中的功能。
Nature. 2016 May 19;533(7603):346-52. doi: 10.1038/nature17971.
3
Role of bacteriophage T4 baseplate in regulating assembly and infection.噬菌体T4基板在调节组装和感染中的作用。
Viruses. 2023 Feb 14;15(2):527. doi: 10.3390/v15020527.
4
Assembly and Capsid Expansion Mechanism of Bacteriophage P22 Revealed by High-Resolution Cryo-EM Structures.高分辨率冷冻电镜结构揭示噬菌体 P22 的组装和衣壳扩张机制。
Viruses. 2023 Jan 26;15(2):355. doi: 10.3390/v15020355.
5
Use of an Integrated Approach Involving AlphaFold Predictions for the Evolutionary Taxonomy of Viruses.运用包含 AlphaFold 预测的综合方法对病毒进行进化分类学研究。
Biomolecules. 2023 Jan 5;13(1):110. doi: 10.3390/biom13010110.
6
Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.大扁形病毒衣壳在未扩张和扩张状态下的结构为二十面体病毒组装提供了新的见解。
Proc Natl Acad Sci U S A. 2022 Oct 4;119(40):e2203272119. doi: 10.1073/pnas.2203272119. Epub 2022 Sep 26.
7
Isolation and Characterization of a Novel Cyanophage Encoding Multiple Auxiliary Metabolic Genes.分离并鉴定一种编码多种辅助代谢基因的新型噬藻体。
Viruses. 2022 Apr 24;14(5):887. doi: 10.3390/v14050887.
8
The Beauty of Bacteriophage T4 Research: Lindsay W. Black and the T4 Head Assembly.噬菌体 T4 研究之美:林赛·W·布莱克与 T4 头部组装。
Viruses. 2022 Mar 28;14(4):700. doi: 10.3390/v14040700.
9
Phage MD8: Genetic Mosaicism and Challenges of Taxonomic Classification of Lambdoid Bacteriophages.噬菌体 MD8:λ 噬菌体的遗传镶嵌现象和分类学分类的挑战。
Int J Mol Sci. 2021 Sep 26;22(19):10350. doi: 10.3390/ijms221910350.
10
Bacteriophage ICP1: A Persistent Predator of .噬菌体 ICP1:. 的持久掠食者
Annu Rev Virol. 2021 Sep 29;8(1):285-304. doi: 10.1146/annurev-virology-091919-072020. Epub 2021 Jul 27.
Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2654-9. doi: 10.1073/pnas.1601654113. Epub 2016 Feb 29.
4
Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease.氧阴离子洞环的二聚化诱导变构变化激活伪狂犬病病毒装配蛋白pUL26N,一种疱疹病毒丝氨酸蛋白酶。
PLoS Pathog. 2015 Jul 10;11(7):e1005045. doi: 10.1371/journal.ppat.1005045. eCollection 2015 Jul.
5
Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.噬菌体T4门户蛋白组装体的近原子分辨率冷冻电镜结构
Nat Commun. 2015 Jul 6;6:7548. doi: 10.1038/ncomms8548.
6
Architecture of a dsDNA viral capsid in complex with its maturation protease.dsDNA 病毒衣壳与其成熟蛋白酶复合物的结构。
Structure. 2014 Feb 4;22(2):230-7. doi: 10.1016/j.str.2013.11.007. Epub 2013 Dec 19.
7
Scalable web services for the PSIPRED Protein Analysis Workbench.可扩展的 Web 服务,用于 PSIPRED 蛋白质分析工作平台。
Nucleic Acids Res. 2013 Jul;41(Web Server issue):W349-57. doi: 10.1093/nar/gkt381. Epub 2013 Jun 8.
8
Mutational analysis of the Pseudomonas aeruginosa myovirus KZ morphogenetic protease gp175.铜绿假单胞菌噬菌体 KZ 形态发生蛋白酶 gp175 的突变分析。
J Virol. 2013 Aug;87(15):8713-25. doi: 10.1128/JVI.01008-13. Epub 2013 Jun 5.
9
The molecular architecture of the bacteriophage T4 neck.噬菌体 T4 颈部的分子结构。
J Mol Biol. 2013 May 27;425(10):1731-44. doi: 10.1016/j.jmb.2013.02.012. Epub 2013 Feb 19.
10
Towards automated crystallographic structure refinement with phenix.refine.利用phenix.refine实现自动化晶体学结构精修
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi: 10.1107/S0907444912001308. Epub 2012 Mar 16.