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用于预测吡喹酮治疗后血吸虫病流行率变化的马尔可夫模型的开发与评估:以乌干达和马里的曼氏血吸虫为例

Development and evaluation of a Markov model to predict changes in schistosomiasis prevalence in response to praziquantel treatment: a case study of Schistosoma mansoni in Uganda and Mali.

作者信息

Deol Arminder, Webster Joanne P, Walker Martin, Basáñez Maria-Gloria, Hollingsworth T Déirdre, Fleming Fiona M, Montresor Antonio, French Michael D

机构信息

Schistosomiasis Control Initiative, Department of Infectious Disease Epidemiology, School of Public Health, Faculty of Medicine (St Mary's campus) Imperial College London, London, W2 1PG, UK.

Department of Pathology and Pathogen Biology, Centre for Emerging, Endemic and Exotic Diseases, Royal Veterinary College, University of London, Herts, London, AL9 7TA, UK.

出版信息

Parasit Vectors. 2016 Oct 12;9(1):543. doi: 10.1186/s13071-016-1824-7.

Abstract

BACKGROUND

Understanding whether schistosomiasis control programmes are on course to control morbidity and potentially switch towards elimination interventions would benefit from user-friendly quantitative tools that facilitate analysis of progress and highlight areas not responding to treatment. This study aimed to develop and evaluate such a tool using large datasets collected during Schistosomiasis Control Initiative-supported control programmes.

METHODS

A discrete-time Markov model was developed using transition probability matrices parameterized with control programme longitudinal data on Schistosoma mansoni obtained from Uganda and Mali. Four matrix variants (A-D) were used to compare different data types for parameterization: A-C from Uganda and D from Mali. Matrix A used data at baseline and year 1 of the control programme; B used year 1 and year 2; C used baseline and year 1 from selected districts, and D used baseline and year 1 Mali data. Model predictions were tested against 3 subsets of the Uganda dataset: dataset 1, the full 4-year longitudinal cohort; dataset 2, from districts not used to parameterize matrix C; dataset 3, cross-sectional data, and dataset 4, from Mali as an independent dataset.

RESULTS

The model parameterized using matrices A, B and D predicted similar infection dynamics (overall and when stratified by infection intensity). Matrices A-D successfully predicted prevalence in each follow-up year for low and high intensity categories in dataset 1 followed by dataset 2. Matrices A, B and D yielded similar and close matches to dataset 1 with marginal discrepancies when comparing model outputs against datasets 2 and 3. Matrix C produced more variable results, correctly estimating fewer data points.

CONCLUSION

Model outputs closely matched observed values and were a useful predictor of the infection dynamics of S. mansoni when using longitudinal and cross-sectional data from Uganda. This also held when the model was tested with data from Mali. This was most apparent when modelling overall infection and in low and high infection intensity areas. Our results indicate the applicability of this Markov model approach as countries aim at reaching their control targets and potentially move towards the elimination of schistosomiasis.

摘要

背景

了解血吸虫病控制项目是否正朝着控制发病率的方向发展,并有可能转向消除干预措施,这将受益于用户友好的定量工具,这些工具有助于分析进展情况并突出对治疗无反应的领域。本研究旨在利用在血吸虫病控制倡议支持的控制项目中收集的大型数据集开发并评估这样一种工具。

方法

使用转换概率矩阵开发了一个离散时间马尔可夫模型,该矩阵用从乌干达和马里获得的曼氏血吸虫病控制项目纵向数据进行参数化。使用了四个矩阵变体(A - D)来比较不同的数据类型进行参数化:A - C来自乌干达,D来自马里。矩阵A使用控制项目基线和第1年的数据;B使用第1年和第2年的数据;C使用选定地区的基线和第1年的数据,D使用马里基线和第1年的数据。模型预测针对乌干达数据集的3个子集进行测试:数据集1,完整的4年纵向队列;数据集2,来自未用于参数化矩阵C的地区;数据集3,横断面数据,以及数据集4,来自马里作为独立数据集。

结果

使用矩阵A、B和D进行参数化的模型预测了相似的感染动态(总体以及按感染强度分层时)。矩阵A - D成功预测了数据集1中低强度和高强度类别在每个随访年份的患病率,其次是数据集2。当将模型输出与数据集2和3进行比较时,矩阵A、B和D与数据集1产生了相似且接近的匹配,存在微小差异。矩阵C产生的结果更具变异性,正确估计的数据点较少。

结论

当使用来自乌干达的纵向和横断面数据时,模型输出与观测值紧密匹配,并且是曼氏血吸虫感染动态的有用预测指标。当用来自马里的数据对模型进行测试时也是如此。这在对总体感染以及低感染强度和高感染强度地区进行建模时最为明显。我们的结果表明,随着各国旨在实现其控制目标并有可能朝着消除血吸虫病迈进,这种马尔可夫模型方法具有适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7efe/5059905/ed47988c9dd3/13071_2016_1824_Fig1_HTML.jpg

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