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该基因最近在……的滚环质粒之间传播,这表明存在一种新的基因转移机制。

The Gene Has Recently Spread between Rolling Circle Plasmids of , Indicative of a Novel Gene Transfer Mechanism.

作者信息

Wassenaar Trudy M, Ussery David W, Ingmer Hanne

机构信息

Molecular Microbiology and Genomics Consultants Zotzenheim, Germany.

Department of Biomedical Informatics, University of Arkansas for Medical Sciences Little Rock, AR, USA.

出版信息

Front Microbiol. 2016 Sep 27;7:1528. doi: 10.3389/fmicb.2016.01528. eCollection 2016.

Abstract

Resistance of species to quaternary ammonium compounds, frequently used as disinfectants and biocides, can be attributed to genes. Most gene products belong to the Small Multidrug Resistant (SMR) protein family, and are often encoded by rolling-circle (RC) replicating plasmids. Four classes of SMR-type gene families have been described in species: , and . Within their class, these genes are highly conserved, but genes are extremely conserved, although they are found in variable plasmid backgrounds. The lower degree of sequence identity of these plasmids compared to the strict nucleotide conservation of their means that this gene has recently spread. In the absence of insertion sequences or other genetic elements explaining the mobility, we sought for an explanation of mobilization by sequence comparison. Publically available sequences of genes, their flanking genes and the replication gene that is invariably present in RC-plasmids were compared to reconstruct the evolutionary history of these plasmids and to explain the recent spread of . Here we propose a new model that explains how is mobilized and transferred to acceptor RC-plasmids without assistance of other genes, by means of its location in between the Double Strand replication Origin (DSO) and the Single-Strand replication Origin (SSO). The proposed mobilization model of this DSO--SSO element represents a novel mechanism of gene mobilization in RC-plasmids, which has also been employed by other genes, such as (conferring lincomycin resistance). The proposed gene mobility has aided to the wide spread of clinically relevant resistance genes in populations.

摘要

物种对常用作消毒剂和杀生物剂的季铵化合物的抗性可能归因于基因。大多数基因产物属于小多药抗性(SMR)蛋白家族,并且通常由滚环(RC)复制质粒编码。在物种中已描述了四类SMR型基因家族: 、 和 。在它们所属的类别中,这些基因高度保守,但 基因极其保守,尽管它们存在于可变的质粒背景中。与这些质粒的严格核苷酸保守性相比,这些质粒较低的序列同一性程度意味着该基因最近已经传播。在没有插入序列或其他解释其移动性的遗传元件的情况下,我们通过序列比较寻找其移动性的解释。将公开可用的 基因序列、其侧翼基因以及RC质粒中始终存在的复制基因进行比较,以重建这些质粒的进化历史并解释 的最近传播。在这里,我们提出了一个新模型,该模型解释了 如何通过其位于双链复制起点(DSO)和单链复制起点(SSO)之间的位置,在没有其他基因帮助的情况下被转移到受体RC质粒上。所提出的这种DSO - SSO元件的移动模型代表了RC质粒中基因移动的一种新机制,其他基因如 (赋予林可霉素抗性)也采用了这种机制。所提出的基因移动性有助于临床相关抗性基因在 群体中的广泛传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56bf/5037232/50885765133c/fmicb-07-01528-g0001.jpg

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