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从梭鲈(Sander lucioperca)分离出的一种蛙病毒的基因组序列

Genome Sequence of a Ranavirus Isolated from Pike-Perch Sander lucioperca.

作者信息

Holopainen Riikka, Subramaniam Kuttichantran, Steckler Natalie K, Claytor Sieara C, Ariel Ellen, Waltzek Thomas B

机构信息

Finnish Food Safety Authority Evira, Veterinary Virology Research Unit, Helsinki, Finland.

Department of Infectious Diseases and Pathology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, USA.

出版信息

Genome Announc. 2016 Nov 17;4(6):e01295-16. doi: 10.1128/genomeA.01295-16.

DOI:10.1128/genomeA.01295-16
PMID:27856591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5114383/
Abstract

The pike-perch iridovirus (PPIV) was isolated in Finland from apparently healthy pike-perch fingerlings during routine disease surveillance. Our phylogenomic analysis revealed that PPIV is the first fish member of a clade of ranaviruses previously described from European and Chinese amphibians.

摘要

梭鲈虹彩病毒(PPIV)是在芬兰的常规疾病监测期间,从看似健康的梭鲈幼鱼中分离出来的。我们的系统基因组分析表明,PPIV是先前在欧洲和中国两栖动物中发现的蛙病毒属一个分支的首个鱼类成员。

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本文引用的文献

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Genome Announc. 2014 Dec 24;2(6):e01293-14. doi: 10.1128/genomeA.01293-14.
2
Susceptibility of the European common frog Rana temporaria to a panel of ranavirus isolates from fish and amphibian hosts.欧洲普通青蛙(林蛙)对一组来自鱼类和两栖动物宿主的蛙病毒分离株的易感性。
Dis Aquat Organ. 2013 Apr 11;103(3):171-83. doi: 10.3354/dao02574.
3
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
5
The genome sequence of the emerging common midwife toad virus identifies an evolutionary intermediate within ranaviruses.新兴普通助产蟾蜍病毒的基因组序列鉴定出蛙病毒属内的一个进化中间体。
J Virol. 2012 Apr;86(7):3617-25. doi: 10.1128/JVI.07108-11. Epub 2012 Feb 1.
6
Tablet--next generation sequence assembly visualization.片剂--下一代序列组装可视化。
Bioinformatics. 2010 Feb 1;26(3):401-2. doi: 10.1093/bioinformatics/btp666. Epub 2009 Dec 4.
7
Ranavirus phylogeny and differentiation based on major capsid protein, DNA polymerase and neurofilament triplet H1-like protein genes.基于主要衣壳蛋白、DNA聚合酶和神经丝三联体H1样蛋白基因的蛙病毒系统发育与分化
Dis Aquat Organ. 2009 Jun 10;85(2):81-91. doi: 10.3354/dao02074.
8
Susceptibility of pike Esox lucius to a panel of Ranavirus isolates.白斑狗鱼(Esox lucius)对一组蛙病毒分离株的易感性。
Dis Aquat Organ. 2009 Feb 25;83(3):169-79. doi: 10.3354/dao02021.
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Virol J. 2007 Jan 19;4:11. doi: 10.1186/1743-422X-4-11.
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