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东海浙江北部近岸海域底栖原核生物的多样性及其代谢潜能的区域差异。

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea.

机构信息

School of Marine Sciences, Ningbo University, Ningbo, 315211, China.

Collaborative Innovation Center for Zhejiang Marine High-efficiency and Healthy Aquaculture, Ningbo, 315211, China.

出版信息

Sci Rep. 2016 Dec 5;6:38709. doi: 10.1038/srep38709.

DOI:10.1038/srep38709
PMID:27917954
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5137025/
Abstract

Knowledge about the drivers of benthic prokaryotic diversity and metabolic potential in interconnected coastal sediments at regional scales is limited. We collected surface sediments across six zones covering ~200 km in coastal northern Zhejiang, East China Sea and combined 16 S rRNA gene sequencing, community-level metabolic prediction, and sediment physicochemical measurements to investigate variations in prokaryotic diversity and metabolic gene composition with geographic distance and under local environmental conditions. Geographic distance was the most influential factor in prokaryotic β-diversity compared with major environmental drivers, including temperature, sediment texture, acid-volatile sulfide, and water depth, but a large unexplained variation in community composition suggested the potential effects of unmeasured abiotic/biotic factors and stochastic processes. Moreover, prokaryotic assemblages showed a biogeographic provincialism across the zones. The predicted metabolic gene composition similarly shifted as taxonomic composition did. Acid-volatile sulfide was strongly correlated with variation in metabolic gene composition. The enrichments in the relative abundance of sulfate-reducing bacteria and genes relevant with dissimilatory sulfate reduction were observed and predicted, respectively, in the Yushan area. These results provide insights into the relative importance of geographic distance and environmental condition in driving benthic prokaryotic diversity in coastal areas and predict specific biogeochemically-relevant genes for future studies.

摘要

关于区域尺度上相互关联的沿海沉积物中底栖原核生物多样性和代谢潜力的驱动因素的知识有限。我们在中国东海浙江北部沿海的六个区域采集了约 200 公里的表层沉积物,并结合 16S rRNA 基因测序、群落水平代谢预测和沉积物理化性质测量,调查了原核生物多样性和代谢基因组成随地理距离和局部环境条件的变化。与主要环境驱动因素(包括温度、沉积物质地、酸可挥发性硫化物和水深)相比,地理距离是影响原核生物β多样性的最主要因素,但群落组成中存在大量无法解释的变异,表明可能存在未测量的非生物/生物因素和随机过程的影响。此外,原核生物群落表现出跨区域的生物地理区域性。预测的代谢基因组成与分类组成的变化相似。酸可挥发性硫化物与代谢基因组成的变化密切相关。在鱼山地区观察到并预测了硫酸盐还原菌相对丰度的富集以及与异化硫酸盐还原相关的基因。这些结果深入了解了地理距离和环境条件在驱动沿海地区底栖原核生物多样性方面的相对重要性,并为未来的研究预测了特定的生物地球化学相关基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/5664ecf8dbf4/srep38709-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/60644dc4a0a4/srep38709-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/41bec0130186/srep38709-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/2456df19569d/srep38709-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/cd59e652ec76/srep38709-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/5664ecf8dbf4/srep38709-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/60644dc4a0a4/srep38709-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/41bec0130186/srep38709-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/2456df19569d/srep38709-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/cd59e652ec76/srep38709-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0894/5137025/5664ecf8dbf4/srep38709-f5.jpg

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