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DNA 编码化学:实现更深入的化学空间采样。

DNA-encoded chemistry: enabling the deeper sampling of chemical space.

机构信息

Discovery Sciences, Innovative Medicines and Early Development Biotech Unit, AstraZeneca, Waltham, Massachusetts 02451, USA.

Pharmaron, Inc., Boston, Massachusetts 02451, USA.

出版信息

Nat Rev Drug Discov. 2017 Feb;16(2):131-147. doi: 10.1038/nrd.2016.213. Epub 2016 Dec 9.

DOI:10.1038/nrd.2016.213
PMID:27932801
Abstract

DNA-encoded chemical library technologies are increasingly being adopted in drug discovery for hit and lead generation. DNA-encoded chemistry enables the exploration of chemical spaces four to five orders of magnitude more deeply than is achievable by traditional high-throughput screening methods. Operation of this technology requires developing a range of capabilities including aqueous synthetic chemistry, building block acquisition, oligonucleotide conjugation, large-scale molecular biological transformations, selection methodologies, PCR, sequencing, sequence data analysis and the analysis of large chemistry spaces. This Review provides an overview of the development and applications of DNA-encoded chemistry, highlighting the challenges and future directions for the use of this technology.

摘要

DNA 编码化合物库技术在药物发现中越来越多地被用于发现命中化合物和先导化合物。DNA 编码化学技术使人们能够探索比传统高通量筛选方法深四个数量级到五个数量级的化学空间。该技术的运作需要开发一系列能力,包括水性合成化学、砌块获取、寡核苷酸连接、大规模分子生物学转化、选择方法、PCR、测序、序列数据分析以及大型化学空间分析。本文综述了 DNA 编码化学技术的发展和应用,重点介绍了该技术应用面临的挑战和未来发展方向。

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Discovery of cofactor-specific, bactericidal Mycobacterium tuberculosis InhA inhibitors using DNA-encoded library technology.利用DNA编码文库技术发现辅因子特异性的结核分枝杆菌InhA杀菌抑制剂
Proc Natl Acad Sci U S A. 2016 Dec 6;113(49):E7880-E7889. doi: 10.1073/pnas.1610978113. Epub 2016 Nov 18.
2
Directed Chemical Evolution with an Outsized Genetic Code.具有超大遗传密码的定向化学进化。
PLoS One. 2016 Aug 10;11(8):e0154765. doi: 10.1371/journal.pone.0154765. eCollection 2016.
3
Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.
Nat Rev Drug Discov. 2025 Jul 7. doi: 10.1038/s41573-025-01225-1.
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Discovery of high-affinity ligands for prostatic acid phosphatase via DNA-encoded library screening enables targeted cancer therapy.通过DNA编码文库筛选发现前列腺酸性磷酸酶的高亲和力配体可实现靶向癌症治疗。
Nat Biomed Eng. 2025 Jun 26. doi: 10.1038/s41551-025-01432-6.
5
Improvements in micelle promoted DNA-encoded library synthesis by surfactant optimisation.通过表面活性剂优化改善胶束促进的DNA编码文库合成。
Org Biomol Chem. 2025 Jun 18. doi: 10.1039/d5ob00864f.
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Flexibility-tuning of dual-display DNA-encoded chemical libraries facilitates cyclic peptide ligand discovery.双展示DNA编码化学文库的灵活性调节有助于环状肽配体的发现。
Nat Commun. 2025 Apr 5;16(1):3273. doi: 10.1038/s41467-025-58507-w.
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From DNA-Encoded Library Screening to : An MTA-Cooperative PRMT5 Inhibitor with Potent Oral In Vivo Efficacy.从DNA编码文库筛选到:一种具有强效口服体内疗效的MTA协同PRMT5抑制剂。
J Med Chem. 2025 Mar 27;68(6):6534-6557. doi: 10.1021/acs.jmedchem.4c03101. Epub 2025 Mar 18.
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CoLiNN: A Tool for Fast Chemical Space Visualization of Combinatorial Libraries Without Enumeration.CoLiNN:一种无需枚举即可快速可视化组合库化学空间的工具。
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Nat Commun. 2025 Feb 18;16(1):1741. doi: 10.1038/s41467-025-56893-9.
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Discovery of selective low molecular weight interleukin-36 receptor antagonists by encoded library technologies.通过编码文库技术发现选择性低分子量白细胞介素-36受体拮抗剂。
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