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从感染农田山羊中分离出的化脓放线杆菌全基因组序列

Complete Genome Sequence of Trueperella pyogenes, Isolated from Infected Farmland Goats.

作者信息

Zhang Su-Hui, Qiu Jin-Jie, Yang Rui, Shen Ke-Fei, Xu Guo-Yang, Fu Li-Zhi

机构信息

Chongqing Academy of Animal Sciences, Chongqing, People's Republic of China.

Chongqing Engineering Research Center for Goat, Chongqing, People's Republic of China.

出版信息

Genome Announc. 2016 Dec 15;4(6):e01421-16. doi: 10.1128/genomeA.01421-16.

DOI:10.1128/genomeA.01421-16
PMID:27979957
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5159590/
Abstract

Trueperella pyogenes is a significant pathogen of livestock, causing diverse diseases, such as mastitis, liver abscessation, and pneumonia. In this study, we have reported the genome sequence of Trueperella pyogenes 2012CQ-ZSH. Moreover, several genes coding for virulence factors were found, such as pyolysin (PYO), nanH, nanP, cbpA, fimC, and fimE.

摘要

化脓放线杆菌是家畜的一种重要病原体，可引发多种疾病，如乳腺炎、肝脓肿和肺炎。在本研究中，我们报道了化脓放线杆菌2012CQ-ZSH的基因组序列。此外，还发现了几个编码毒力因子的基因，如溶血素（PYO）、唾液酸酶NanH、唾液酸酶NanP、纤连蛋白结合蛋白A（CbpA）、菌毛蛋白C（FimC）和菌毛重组酶E（FimE）。

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本文引用的文献

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Identification of Trueperella pyogenes isolated from bovine mastitis by Fourier transform infrared spectroscopy.利用傅里叶变换红外光谱法鉴定从牛乳腺炎中分离出的化脓放线菌。
PLoS One. 2014 Aug 18;9(8):e104654. doi: 10.1371/journal.pone.0104654. eCollection 2014.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder：一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
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KAAS: an automatic genome annotation and pathway reconstruction server.KAAS：一个自动基因组注释和通路重建服务器。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
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The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.CRISPRdb数据库以及用于显示CRISPRs并生成间隔序列和重复序列字典的工具。
BMC Bioinformatics. 2007 May 23;8:172. doi: 10.1186/1471-2105-8-172.
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
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