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通过翻译终止重新分配终止密码子:少数真核生物如何打破这一教条。

Reassigning stop codons via translation termination: How a few eukaryotes broke the dogma.

作者信息

Alkalaeva Elena, Mikhailova Tatiana

机构信息

Engelhardt Institute of Molecular Biology, the Russian Academy of Sciences, Moscow, Russia.

出版信息

Bioessays. 2017 Mar;39(3). doi: 10.1002/bies.201600213. Epub 2016 Dec 23.

DOI:10.1002/bies.201600213
PMID:28009453
Abstract

The genetic code determines how amino acids are encoded within mRNA. It is universal among the vast majority of organisms, although several exceptions are known. Variant genetic codes are found in ciliates, mitochondria, and numerous other organisms. All revealed genetic codes (standard and variant) have at least one codon encoding a translation stop signal. However, recently two new genetic codes with a reassignment of all three stop codons were revealed in studies examining the protozoa transcriptomes. Here, we discuss this finding and the recent studies of variant genetic codes in eukaryotes. We consider the possible molecular mechanisms allowing the use of certain codons as sense and stop signals simultaneously. The results obtained by studying these amazing organisms represent a new and exciting insight into the mechanism of stop codon decoding in eukaryotes. Also see the video abstract here.

摘要

遗传密码决定了氨基酸在mRNA中的编码方式。尽管已知有一些例外情况,但它在绝大多数生物体中是通用的。在纤毛虫、线粒体和许多其他生物体中发现了变异的遗传密码。所有已揭示的遗传密码(标准密码和变异密码)都至少有一个编码翻译终止信号的密码子。然而,最近在对原生动物转录组的研究中发现了两种新的遗传密码,其中所有三个终止密码子都被重新分配了功能。在这里,我们讨论这一发现以及最近对真核生物中变异遗传密码的研究。我们考虑了允许某些密码子同时用作有义信号和终止信号的可能分子机制。通过研究这些神奇的生物体所获得的结果,为真核生物中终止密码子解码机制提供了全新且令人兴奋的见解。另请参阅此处的视频摘要。

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Reassigning stop codons via translation termination: How a few eukaryotes broke the dogma.通过翻译终止重新分配终止密码子:少数真核生物如何打破这一教条。
Bioessays. 2017 Mar;39(3). doi: 10.1002/bies.201600213. Epub 2016 Dec 23.
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引用本文的文献

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Nontriplet feature of genetic code in ciliates is a result of neutral evolution.纤毛虫遗传密码的非同三联体特征是中性进化的结果。
Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221683120. doi: 10.1073/pnas.2221683120. Epub 2023 May 22.
2
Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates.停或不停:纤毛虫中重排终止密码子的全基因组分析。
Mol Biol Evol. 2023 Apr 4;40(4). doi: 10.1093/molbev/msad064.
3
Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox.
终止密码子的使用作为窥探基因组进化的窗口:突变、选择、有偏基因转换和 TAG 悖论。
Genome Biol Evol. 2022 Aug 3;14(8). doi: 10.1093/gbe/evac115.
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Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates.单细胞转录组学揭示纤毛虫基因组结构与基因家族进化之间的相关性。
mBio. 2019 Dec 24;10(6):e02524-19. doi: 10.1128/mBio.02524-19.
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Microbiome. 2019 Dec 10;7(1):157. doi: 10.1186/s40168-019-0768-5.
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Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies.在生物多样性研究中,基因组浅层测序是一种从乙醇保存的标本中组装完整线粒体基因组的低成本且可靠的策略。
PeerJ. 2019 Sep 13;7:e7543. doi: 10.7717/peerj.7543. eCollection 2019.
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