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黄杆菌属,新属,一种从海水中分离到的新型 α-变形菌。

Hyphobacterium vulgare gen. nov., sp. nov., a novel alphaproteobacterium isolated from seawater.

机构信息

Zhejiang Provincial Key Laboratory of Silkworm Bioreactor and Biomedicine, Hangzhou 310018, PR China.

College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 May;67(5):1169-1176. doi: 10.1099/ijsem.0.001780. Epub 2017 May 25.

Abstract

A Gram-stain-negative, aerobic, non-spore-forming, non-motile, oval to rod-shaped, prosthecate bacterium, designated strain WM6T, was isolated from a seawater sample collected from the South China Sea at a depth of 150 m and subjected to a polyphasic taxonomic investigation. Cells of strain WM6T were approximately 0.5-0.6 µm in width and 0.8-1.2 µm in length, and colonies were smooth, circular, convex and whitish yellow. Strain WM6T was found to grow at 10-45 °C (optimum, 30 °C), at pH 6.5-9.0 (optimum, pH 7.5-8.5) and with 1-6 % (w/v) NaCl (optimum, 1-2 %). Chemotaxonomic analysis showed the predominant respiratory quinone and the major fatty acid of strains WM6T were ubiquinone-10 and C18 : 1ω7c, respectively. The polar lipids of strain WM6T were phosphatidylglycerol, glucuronopyranosyldiglyceride, monoglycosyldiglyceride, sulfo-quinovosyl diacylglycerol, seven unknown glycolipids and two unknown lipids. The DNA G+C content of strain WM6T was determined to be 59.8 mol% by HPLC. 16S rRNA gene sequence similarities showed that strain WM6T was related most closely to the genus Maricaulis with a similarity range from 92.3 to 93.8 %. Phylogenetic trees reconstructed with the neighbour-joining and maximum-likelihood methods using mega and maximum-likelihood methods using arb showed that strain WM6T constituted a separated branch in the family Hyphomonadaceae. Differential phenotypic properties, together with phylogenetic distinctiveness, demonstrated that strain WM6T is clearly distinct from any validly published genus. On the basis of these features, strain WM6T represents a novel species of a new genus with the name Hyphobacterium vulgare gen. nov., sp. nov. The type strain of Hyphobacterium vulgare is WM6T (=MCCC 1K03222T=KCTC 52487T).

摘要

一株革兰氏阴性、需氧、不产芽孢、不运动、直杆状、具有假根的细菌,被命名为 WM6T 菌株,从南海 150 米深处的海水样本中分离得到,并进行了多相分类学研究。WM6T 菌株的细胞宽度约为 0.5-0.6μm,长度约为 0.8-1.2μm,菌落光滑、圆形、凸起、呈乳白色。WM6T 菌株在 10-45°C(最适温度为 30°C)、pH6.5-9.0(最适 pH 为 7.5-8.5)和 1-6%(w/v)NaCl(最适为 1-2%)的条件下生长。化学分类分析表明,WM6T 菌株的主要呼吸醌和主要脂肪酸分别为泛醌-10 和 C18 : 1ω7c。WM6T 菌株的极性脂包括磷脂酰甘油、葡糖醛酸吡喃糖基二甘油酯、单糖基二甘油酯、硫酸奎诺糖二酰基甘油、七种未知糖脂和两种未知脂类。通过 HPLC 法测定 WM6T 菌株的 DNA G+C 含量为 59.8mol%。16S rRNA 基因序列相似性分析表明,WM6T 菌株与 Maricaulis 属最为密切,相似性范围为 92.3-93.8%。使用 mega 和 arb 构建的基于邻接法和最大似然法的系统发育树表明,WM6T 菌株在噬纤维菌科中构成一个独立的分支。基于表型差异和系统发育差异,WM6T 菌株与任何已发表的有效属都明显不同。基于这些特征,WM6T 菌株代表了一个新属的新种,命名为 Hyphobacterium vulgare 属 nov.,sp. nov.。Hyphobacterium vulgare 的模式菌株为 WM6T(=MCCC 1K03222T=KCTC 52487T)。

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