• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

非血红素铁卤化酶 SyrB2 中氯化与羟化选择性的前沿分子轨道贡献。

Frontier Molecular Orbital Contributions to Chlorination versus Hydroxylation Selectivity in the Non-Heme Iron Halogenase SyrB2.

机构信息

J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences , Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.

Department of Chemistry, Stanford University , Stanford, California 94305-5080, United States.

出版信息

J Am Chem Soc. 2017 Feb 15;139(6):2396-2407. doi: 10.1021/jacs.6b11995. Epub 2017 Feb 2.

DOI:10.1021/jacs.6b11995
PMID:28095695
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5310988/
Abstract

The ability of an Fe═O intermediate in SyrB2 to perform chlorination versus hydroxylation was computationally evaluated for different substrates that had been studied experimentally. The π-trajectory for H atom abstraction (Fe═O oriented perpendicular to the C-H bond of substrate) was found to lead to the S = 2 five-coordinate HO-Fe-Cl complex with the C of the substrate, π-oriented relative to both the Cl and the OH ligands. From this ferric intermediate, hydroxylation is thermodynamically favored, but chlorination is intrinsically more reactive due to the energy splitting between two key redox-active dπ* frontier molecular orbitals (FMOs). The splitting is determined by the differential ligand field effect of Cl versus OH on the Fe center. This makes chlorination effectively competitive with hydroxylation. Chlorination versus hydroxylation selectivity is then determined by the orientation of the substrate with respect to the HO-Fe-Cl plane that controls either the Cl or the OH to rebound depending on the relative π-overlap with the substrate C radical. The differential contribution of the two FMOs to chlorination versus hydroxylation selectivity in SyrB2 is related to a reaction mechanism that involves two asynchronous transfers: electron transfer from the substrate radical to the iron center followed by late ligand (Cl or OH) transfer to the substrate.

摘要

为不同的实验研究过的底物计算了 SyrB2 中 Fe═O 中间体进行氯化与羟化的能力。发现 H 原子离域(Fe═O 垂直于底物的 C-H 键定向)的 π 轨道导致 S = 2 五配位 HO-Fe-Cl 配合物,其中底物的 C 相对于 Cl 和 OH 配体处于π 取向。从这个三价铁中间体来看,羟化是热力学有利的,但氯化由于两个关键氧化还原活性 dπ*前线分子轨道(FMO)之间的能量分裂而具有内在更高的反应性。这种分裂取决于 Cl 与 OH 对 Fe 中心的配体场效应的差异。这使得氯化实际上与羟化具有竞争力。因此,氯化与羟化的选择性取决于底物相对于 HO-Fe-Cl 平面的取向,这控制着 Cl 或 OH 与底物 C 自由基的反弹,具体取决于与底物的相对 π 重叠。SyrB2 中两个 FMO 对氯化与羟化选择性的差异贡献与涉及两个异步转移的反应机制有关:从底物自由基到铁中心的电子转移,然后是迟滞配体(Cl 或 OH)向底物的转移。

相似文献

1
Frontier Molecular Orbital Contributions to Chlorination versus Hydroxylation Selectivity in the Non-Heme Iron Halogenase SyrB2.非血红素铁卤化酶 SyrB2 中氯化与羟化选择性的前沿分子轨道贡献。
J Am Chem Soc. 2017 Feb 15;139(6):2396-2407. doi: 10.1021/jacs.6b11995. Epub 2017 Feb 2.
2
Chlorination versus hydroxylation selectivity mediated by the non-heme iron halogenase WelO5.非血红素卤酶 WelO5 介导的氯化作用与羟化作用选择性。
Phys Chem Chem Phys. 2020 Apr 29;22(16):8699-8712. doi: 10.1039/d0cp00791a.
3
Electronic Structure of the Ferryl Intermediate in the α-Ketoglutarate Dependent Non-Heme Iron Halogenase SyrB2: Contributions to H Atom Abstraction Reactivity.α-酮戊二酸依赖的非血红素铁卤化酶SyrB2中高铁中间体的电子结构:对氢原子夺取反应活性的贡献
J Am Chem Soc. 2016 Apr 20;138(15):5110-22. doi: 10.1021/jacs.6b01151. Epub 2016 Apr 12.
4
Mechanism of selective halogenation by SyrB2: a computational study.SyrB2 介导的选择性卤化作用机制:一项计算研究。
J Am Chem Soc. 2010 Sep 22;132(37):12887-98. doi: 10.1021/ja101877a.
5
Mechanistic insights on the ortho-hydroxylation of aromatic compounds by non-heme iron complex: a computational case study on the comparative oxidative ability of ferric-hydroperoxo and high-valent Fe(IV)═O and Fe(V)═O intermediates.非血红素铁配合物催化芳香族化合物邻位羟化的机理研究:铁过氧配合物和高价态 Fe(IV)═O 与 Fe(V)═O 中间体相对氧化能力的计算研究案例。
J Am Chem Soc. 2013 Mar 20;135(11):4235-49. doi: 10.1021/ja307077f. Epub 2013 Mar 7.
6
Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.底物定位控制脂肪族卤化酶SyrB2中卤化与羟基化之间的分配。
Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17723-8. doi: 10.1073/pnas.0909649106. Epub 2009 Oct 6.
7
Regioselectivity of substrate hydroxylation versus halogenation by a nonheme iron(IV)-oxo complex: possibility of rearrangement pathways.非血红素铁(IV)-氧配合物催化的底物羟化与卤化的区域选择性:重排途径的可能性。
J Biol Inorg Chem. 2012 Aug;17(6):841-52. doi: 10.1007/s00775-012-0901-4. Epub 2012 May 13.
8
First-principles study of non-heme Fe(II) halogenase SyrB2 reactivity.非血红素铁(II)卤化酶SyrB2反应活性的第一性原理研究
J Am Chem Soc. 2009 Oct 14;131(40):14426-33. doi: 10.1021/ja905206k.
9
Structural analysis of an open active site conformation of nonheme iron halogenase CytC3.非血红素铁卤化酶CytC3开放活性位点构象的结构分析
J Am Chem Soc. 2009 Apr 8;131(13):4872-9. doi: 10.1021/ja8097355.
10
Elucidation of the Fe(IV)=O intermediate in the catalytic cycle of the halogenase SyrB2.阐明卤代酶 SyrB2 催化循环中的 Fe(IV)=O 中间物。
Nature. 2013 Jul 18;499(7458):320-3. doi: 10.1038/nature12304.

引用本文的文献

1
C-C Bond Cleavage in the Late-Stage Biosynthesis of Huperzine Alkaloids Occurs via Enzymatic Retro-Aza-Prins Reaction.石杉碱生物碱后期生物合成中的C-C键断裂通过酶促逆氮杂-Prins反应发生。
J Am Chem Soc. 2025 Jun 18;147(24):20265-20272. doi: 10.1021/jacs.4c10410. Epub 2025 May 9.
2
Exploration of selenophene analogue and different acceptor influence on photovoltaic properties of pyrrole-4,6(5-H)-dione based chromophores via quantum chemical investigations.通过量子化学研究探索硒吩类似物和不同受体对基于吡咯-4,6(5-H)-二酮的发色团光伏性能的影响。
Sci Rep. 2025 Apr 28;15(1):14792. doi: 10.1038/s41598-025-99585-6.
3

本文引用的文献

1
Structural basis for halogenation by iron- and 2-oxo-glutarate-dependent enzyme WelO5.铁和2-氧代戊二酸依赖性酶WelO5卤化反应的结构基础
Nat Chem Biol. 2016 Aug;12(8):636-40. doi: 10.1038/nchembio.2112. Epub 2016 Jun 27.
2
Mono- and binuclear non-heme iron chemistry from a theoretical perspective.从理论角度看单核和双核非血红素铁化学
J Biol Inorg Chem. 2016 Sep;21(5-6):619-44. doi: 10.1007/s00775-016-1357-8. Epub 2016 May 26.
3
Electronic Structure of the Ferryl Intermediate in the α-Ketoglutarate Dependent Non-Heme Iron Halogenase SyrB2: Contributions to H Atom Abstraction Reactivity.
Discovery of Noncanonical Iron and 2-Oxoglutarate Dependent Enzymes Involved in C-C and C-N Bond Formation in Biosynthetic Pathways.
发现参与生物合成途径中碳-碳和碳-氮键形成的非经典铁和2-氧代戊二酸依赖性酶。
ACS Bio Med Chem Au. 2025 Mar 10;5(2):238-261. doi: 10.1021/acsbiomedchemau.5c00001. eCollection 2025 Apr 16.
4
Exploring key electronic and non-linear optical amplitute with bilateral intramolecular charge transfer into thieno[3,2-]thiophene-based compounds: a DFT approach.利用双边分子内电荷转移到基于噻吩并[3,2 -]噻吩的化合物中探索关键的电子和非线性光学振幅:一种密度泛函理论方法
RSC Adv. 2025 Feb 25;15(8):6291-6307. doi: 10.1039/d4ra08662g. eCollection 2025 Feb 19.
5
Comparison of a Nonheme Iron Cyclopropanase with a Homologous Hydroxylase Reveals Mechanistic Features Associated with Distinct Reaction Outcomes.非血红素铁环丙烷酶与同源羟化酶的比较揭示了与不同反应结果相关的机制特征。
J Am Chem Soc. 2025 Feb 19;147(7):6162-6170. doi: 10.1021/jacs.4c17741. Epub 2025 Feb 3.
6
How Do Variants of Residues in the First Coordination Sphere, Second Coordination Sphere, and Remote Areas Influence the Catalytic Mechanism of Non-Heme Fe(II)/2-Oxoglutarate Dependent Ethylene-Forming Enzyme?第一配位层、第二配位层及远端区域中残基的变体如何影响非血红素铁(II)/2-氧代戊二酸依赖性乙烯形成酶的催化机制?
ACS Catal. 2024 Dec 5;14(24):18550-18569. doi: 10.1021/acscatal.4c04010. eCollection 2024 Dec 20.
7
Experimental Definition of the = 1 π vs = 2 σ Reactivity and = 2 Character in the Ground State of an = 1 FeO Complex.1π对2σ反应性以及1FeO配合物基态中2特征的实验定义。 (注:原文中部分化学符号表述不太清晰完整,可能会影响理解的精准度,比如“ = 1 π”“ = 2 σ”“ = 2 Character”等,推测可能是“1π”“2σ”“2特征”之类的,但按要求严格翻译了原文内容 )
J Am Chem Soc. 2024 Dec 25;146(51):35139-35145. doi: 10.1021/jacs.4c11034. Epub 2024 Dec 13.
8
Electronic structure, global reactivity descriptors and nonlinear optical properties of glycine interacted with ZnO, MgO and CaO for bacterial detection.电子结构、全局反应性描述符和用于细菌检测的 ZnO、MgO 和 CaO 与甘氨酸相互作用的非线性光学性质。
Sci Rep. 2024 Oct 1;14(1):22801. doi: 10.1038/s41598-024-72846-6.
9
Spectroscopic definition of ferrous active sites in non-heme iron enzymes.非血红素铁酶中亚铁活性部位的光谱学定义。
Methods Enzymol. 2024;703:29-49. doi: 10.1016/bs.mie.2024.05.019. Epub 2024 Jun 21.
10
Optimized Substrate Positioning Enables Switches in the C-H Cleavage Site and Reaction Outcome in the Hydroxylation-Epoxidation Sequence Catalyzed by Hyoscyamine 6β-Hydroxylase.优化的底物定位使颠茄碱 6β-羟化酶催化的 C-H 裂解位点和反应产物在羟化-环氧化序列中发生转变。
J Am Chem Soc. 2024 Sep 4;146(35):24271-24287. doi: 10.1021/jacs.4c04406. Epub 2024 Aug 22.
α-酮戊二酸依赖的非血红素铁卤化酶SyrB2中高铁中间体的电子结构:对氢原子夺取反应活性的贡献
J Am Chem Soc. 2016 Apr 20;138(15):5110-22. doi: 10.1021/jacs.6b01151. Epub 2016 Apr 12.
4
Modeling Non-Heme Iron Halogenases: High-Spin Oxoiron(IV)-Halide Complexes That Halogenate C-H Bonds.模拟非血红素铁卤化酶:卤化 C-H 键的高自旋氧代铁(IV)-卤化物配合物。
J Am Chem Soc. 2016 Mar 2;138(8):2484-7. doi: 10.1021/jacs.5b11511. Epub 2016 Feb 19.
5
To rebound or dissociate? This is the mechanistic question in C-H hydroxylation by heme and nonheme metal-oxo complexes.发生回弹还是离解?这是非血红素和金属-氧络合物的 C-H 羟化的机理问题。
Chem Soc Rev. 2016 Mar 7;45(5):1197-210. doi: 10.1039/c5cs00566c.
6
Experimental Correlation of Substrate Position with Reaction Outcome in the Aliphatic Halogenase, SyrB2.脂肪族卤化酶SyrB2中底物位置与反应结果的实验相关性
J Am Chem Soc. 2015 Jun 3;137(21):6912-9. doi: 10.1021/jacs.5b03370. Epub 2015 May 19.
7
Direct nitration and azidation of aliphatic carbons by an iron-dependent halogenase.铁依赖卤代酶对脂肪族碳的直接硝化和叠氮化。
Nat Chem Biol. 2014 Mar;10(3):209-15. doi: 10.1038/nchembio.1438. Epub 2014 Jan 26.
8
Elucidation of the Fe(IV)=O intermediate in the catalytic cycle of the halogenase SyrB2.阐明卤代酶 SyrB2 催化循环中的 Fe(IV)=O 中间物。
Nature. 2013 Jul 18;499(7458):320-3. doi: 10.1038/nature12304.
9
Substrate placement influences reactivity in non-heme Fe(II) halogenases and hydroxylases.底物放置位置影响非血红素 Fe(II)卤化酶和羟化酶的反应活性。
J Biol Chem. 2013 Apr 19;288(16):11233-41. doi: 10.1074/jbc.M112.415570. Epub 2013 Feb 28.
10
Evidence for an alternative to the oxygen rebound mechanism in C-H bond activation by non-heme Fe(IV)O complexes.非血红素 Fe(IV)O 配合物活化 C-H 键的氧回弹机制替代物的证据。
J Am Chem Soc. 2012 Dec 19;134(50):20222-5. doi: 10.1021/ja308290r. Epub 2012 Dec 6.