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脂肪族卤化酶SyrB2中底物位置与反应结果的实验相关性

Experimental Correlation of Substrate Position with Reaction Outcome in the Aliphatic Halogenase, SyrB2.

作者信息

Martinie Ryan J, Livada Jovan, Chang Wei-chen, Green Michael T, Krebs Carsten, Bollinger J Martin, Silakov Alexey

机构信息

Departments of †Chemistry and of ‡Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.

出版信息

J Am Chem Soc. 2015 Jun 3;137(21):6912-9. doi: 10.1021/jacs.5b03370. Epub 2015 May 19.

Abstract

The iron(II)- and 2-(oxo)glutarate-dependent (Fe/2OG) oxygenases catalyze an array of challenging transformations, but how individual members of the enzyme family direct different outcomes is poorly understood. The Fe/2OG halogenase, SyrB2, chlorinates C4 of its native substrate, l-threonine appended to the carrier protein, SyrB1, but hydroxylates C5 of l-norvaline and, to a lesser extent, C4 of l-aminobutyric acid when SyrB1 presents these non-native amino acids. To test the hypothesis that positioning of the targeted carbon dictates the outcome, we defined the positions of these three substrates by measuring hyperfine couplings between substrate deuterium atoms and the stable, EPR-active iron-nitrosyl adduct, a surrogate for reaction intermediates. The Fe-(2)H distances and N-Fe-(2)H angles, which vary from 4.2 Å and 85° for threonine to 3.4 Å and 65° for norvaline, rationalize the trends in reactivity. This experimental correlation of position to outcome should aid in judging from structural data on other Fe/2OG enzymes whether they suppress hydroxylation or form hydroxylated intermediates on the pathways to other outcomes.

摘要

铁(II)和2-(氧代)戊二酸依赖性(Fe/2OG)加氧酶催化一系列具有挑战性的转化反应,但人们对该酶家族的各个成员如何导致不同结果却知之甚少。Fe/2OG卤化酶SyrB2会对其天然底物(连接在载体蛋白SyrB1上的L-苏氨酸)的C4位进行氯化,但当SyrB1呈现这些非天然氨基酸时,SyrB2会使L-正缬氨酸的C5位羟基化,对L-氨基丁酸的C4位羟基化程度较低。为了验证目标碳原子的位置决定反应结果这一假设,我们通过测量底物氘原子与稳定的、具有电子顺磁共振活性的铁-亚硝基加合物(反应中间体的替代物)之间的超精细偶合,确定了这三种底物的位置。Fe-(2)H距离和N-Fe-(2)H角度,从苏氨酸的4.2 Å和85°到正缬氨酸的3.4 Å和65°不等,解释了反应活性的趋势。这种位置与反应结果的实验相关性,应有助于根据其他Fe/2OG酶的结构数据,判断它们是否会抑制羟基化,或在通往其他反应结果的途径中形成羟基化中间体。

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