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本文引用的文献

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Growth of Chitinophaga pinensis on Plant Cell Wall Glycans and Characterisation of a Glycoside Hydrolase Family 27 β-l-Arabinopyranosidase Implicated in Arabinogalactan Utilisation.食松几丁质杆菌在植物细胞壁聚糖上的生长以及参与阿拉伯半乳聚糖利用的糖苷水解酶家族27β-L-阿拉伯吡喃糖苷酶的特性分析
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2
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
3
Chitinophaga eiseniae sp. nov., isolated from vermicompost.噬几丁质菌属（Chitinophaga）新种，从蚯蚓粪中分离得到。
Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2373-2378. doi: 10.1099/ijs.0.023028-0. Epub 2010 Nov 5.
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The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
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Phylogenetic position of Chitinophaga pinensis in the Flexibacter-Bacteroides-Cytophaga phylum.食松几丁质噬菌在柔杆菌-拟杆菌-噬纤维菌门中的系统发育位置。
Int J Syst Bacteriol. 1999 Apr;49 Pt 2:479-81. doi: 10.1099/00207713-49-2-479.

从木质纤维素生物质降解菌群中分离出的噬几丁质菌菌株的基因组序列草图

Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium.

作者信息

Kishi Luciano T, Lopes Erica M, Fernandes Camila C, Fernandes Gabriela C, Sacco Lais P, Carareto Alves Lucia M, Lemos Eliana G M

机构信息

Departamento de Tecnologia, Universidade Estadual Paulista (UNESP), Faculdade de Ciências Agrárias e Veterinárias, Laboratório de Bioquímica de Microrganismos e Planta (LBMP), Jaboticabal, São Paulo, Brazil.

Departamento de Tecnologia, Universidade Estadual Paulista (UNESP), Faculdade de Ciências Agrárias e Veterinárias, Laboratório Multiusuário de Sequenciamento em Larga Escala e Expressão Gênica, Jaboticabal, São Paulo, Brazil.

出版信息

Genome Announc. 2017 Jan 19;5(3):e01056-16. doi: 10.1128/genomeA.01056-16.

DOI:10.1128/genomeA.01056-16
PMID:28104646
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5255924/
Abstract

Chitinophaga comprises microorganisms capable of degrading plant-derived carbohydrates, serving as a source of new tools for the characterization and degradation of plant biomass. Here, we report the draft genome assembly of a Chitinophaga strain with 8.2 Mbp and 7,173 open reading frames (ORFs), isolated from a bacterial consortium that is able to degrade lignocellulose.

摘要

噬几丁质菌属包含能够降解植物源碳水化合物的微生物，可作为表征和降解植物生物质的新工具来源。在此，我们报告了从一个能够降解木质纤维素的细菌群落中分离出的一株噬几丁质菌的基因组草图组装结果，其基因组大小为8.2兆碱基对，含有7173个开放阅读框（ORF）。