Rodriguez-Brenes Ignacio A, Hofacre Andrew, Fan Hung, Wodarz Dominik
Department of Mathematics, University of California, Irvine, Irvine, California, United States of America.
Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, California, United States of America.
PLoS Comput Biol. 2017 Jan 20;13(1):e1005241. doi: 10.1371/journal.pcbi.1005241. eCollection 2017 Jan.
While virus growth dynamics have been well-characterized in several infections, data are typically collected once the virus population becomes easily detectable. Earlier dynamics, however, remain less understood. We recently reported unusual early dynamics in an experimental system using adenovirus infection of human embryonic kidney (293) cells. Under identical experimental conditions, inoculation at low infection multiplicities resulted in either robust spread, or in limited spread that eventually stalled, with both outcomes occurring with approximately equal frequencies. The reasons underlying these observations have not been understood. Here, we present further experimental data showing that inhibition of interferon-induced antiviral states in cells results in a significant increase in the percentage of robust infections that are observed, implicating a race between virus replication and the spread of the anti-viral state as a central mechanism. Analysis of a variety of computational models, however, reveals that this alone cannot explain the simultaneous occurrence of both viral growth outcomes under identical conditions, and that additional biological mechanisms have to be invoked to explain the data. One such mechanism is the ability of the virus to overcome the antiviral state through multiple infection of cells. If this is included in the model, two outcomes of viral spread are found to be simultaneously stable, depending on initial conditions. In stochastic versions of such models, the system can go by chance to either state from identical initial conditions, with the relative frequency of the outcomes depending on the strength of the interferon-based anti-viral response, consistent with the experiments. This demonstrates considerable complexity during the early phase of the infection that can influence the ability of a virus to become successfully established. Implications for the initial dynamics of oncolytic virus spread through tumors are discussed.
虽然病毒生长动力学在几种感染中已得到充分表征,但数据通常是在病毒群体易于检测到时收集的。然而,早期动力学仍不太为人所理解。我们最近报道了在一个实验系统中使用腺病毒感染人胚肾(293)细胞时出现的不寻常早期动力学。在相同的实验条件下,以低感染复数接种会导致强劲传播或有限传播,最终传播停滞,两种结果出现的频率大致相等。这些观察结果背后的原因尚不清楚。在这里,我们提供了进一步的实验数据,表明抑制细胞中干扰素诱导的抗病毒状态会导致观察到的强劲感染百分比显著增加,这意味着病毒复制与抗病毒状态传播之间的竞争是一个核心机制。然而,对各种计算模型的分析表明,仅此一点无法解释在相同条件下两种病毒生长结果的同时出现,还必须引入其他生物学机制来解释这些数据。一种这样的机制是病毒通过多次感染细胞来克服抗病毒状态的能力。如果将此纳入模型,发现病毒传播的两种结果会同时稳定,这取决于初始条件。在这种模型的随机版本中,系统可以从相同的初始条件偶然进入任何一种状态,结果的相对频率取决于基于干扰素的抗病毒反应的强度,这与实验结果一致。这表明在感染早期存在相当大的复杂性,这可能会影响病毒成功建立的能力。文中还讨论了溶瘤病毒在肿瘤中传播的初始动力学的相关影响。