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对 77 万份基因组进行聚类分析,揭示了北美后殖民时期的人口结构。

Clustering of 770,000 genomes reveals post-colonial population structure of North America.

机构信息

AncestryDNA, San Francisco, California 94107, USA.

AncestryDNA, Lehi, Utah 84043, USA.

出版信息

Nat Commun. 2017 Feb 7;8:14238. doi: 10.1038/ncomms14238.

DOI:10.1038/ncomms14238
PMID:28169989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5309710/
Abstract

Despite strides in characterizing human history from genetic polymorphism data, progress in identifying genetic signatures of recent demography has been limited. Here we identify very recent fine-scale population structure in North America from a network of over 500 million genetic (identity-by-descent, IBD) connections among 770,000 genotyped individuals of US origin. We detect densely connected clusters within the network and annotate these clusters using a database of over 20 million genealogical records. Recent population patterns captured by IBD clustering include immigrants such as Scandinavians and French Canadians; groups with continental admixture such as Puerto Ricans; settlers such as the Amish and Appalachians who experienced geographic or cultural isolation; and broad historical trends, including reduced north-south gene flow. Our results yield a detailed historical portrait of North America after European settlement and support substantial genetic heterogeneity in the United States beyond that uncovered by previous studies.

摘要

尽管在从遗传多态性数据描绘人类历史方面取得了进展,但在确定最近人口统计学的遗传特征方面的进展有限。在这里,我们从美国起源的 77 万多名个体的超过 5 亿个遗传(亲缘关系,IBD)连接网络中识别出北美的近期精细人口结构。我们检测到网络中的密集连接集群,并使用超过 2000 万条谱系记录数据库对这些集群进行注释。IBD 聚类捕捉到的近期人口模式包括移民,如斯堪的纳维亚人和法裔加拿大人;具有大陆混合血统的群体,如波多黎各人;经历地理或文化隔离的定居者,如阿米什人和阿巴拉契亚人;以及包括南北基因流减少在内的广泛历史趋势。我们的研究结果描绘了欧洲人定居后的北美的详细历史画卷,并支持美国存在比以往研究揭示的更大的遗传异质性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/1efe16aed67c/ncomms14238-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/224936712fba/ncomms14238-f1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/1efe16aed67c/ncomms14238-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/224936712fba/ncomms14238-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/c32eec452625/ncomms14238-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/0e7f5e295f98/ncomms14238-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/41ba54a24eac/ncomms14238-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/d93656c80d85/ncomms14238-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1712/5309710/1efe16aed67c/ncomms14238-f6.jpg

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1
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2
The Great Migration and African-American Genomic Diversity.大迁徙与非裔美国人的基因组多样性
PLoS Genet. 2016 May 27;12(5):e1006059. doi: 10.1371/journal.pgen.1006059. eCollection 2016 May.
3
Inference and Analysis of Population Structure Using Genetic Data and Network Theory.利用遗传数据和网络理论进行群体结构的推断与分析
欧洲罗姆人散居群体的基因印记:从巴尔干半岛到伊比利亚半岛的证据。
Hum Genet. 2025 Apr;144(4):463-479. doi: 10.1007/s00439-025-02735-z. Epub 2025 Mar 17.
4
Overview of Alzheimer's Disease Neuroimaging Initiative and future clinical trials.阿尔茨海默病神经影像学计划概述及未来临床试验
Alzheimers Dement. 2025 Jan;21(1):e14321. doi: 10.1002/alz.14321. Epub 2024 Dec 22.
5
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medRxiv. 2024 Sep 28:2024.09.27.24314513. doi: 10.1101/2024.09.27.24314513.
6
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Sci Rep. 2024 May 1;14(1):9979. doi: 10.1038/s41598-024-60568-8.
7
Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum.强烈的正选择偏倚了基于亲缘关系的对疟原虫 falciparum 近期人口动态和种群结构的推断。
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8
Accurate detection of identity-by-descent segments in human ancient DNA.准确检测人类古代 DNA 中的同源片段。
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9
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medRxiv. 2023 Oct 25:2023.10.24.23297096. doi: 10.1101/2023.10.24.23297096.
10
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Nature. 2023 Oct;622(7984):784-793. doi: 10.1038/s41586-023-06595-3. Epub 2023 Oct 11.
Genetics. 2016 Apr;202(4):1299-312. doi: 10.1534/genetics.115.182626. Epub 2016 Feb 17.
4
A global reference for human genetic variation.人类遗传变异的全球参考。
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POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.群体遗传学。美洲原住民更新世及近代群体历史的基因组证据。
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6
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