Novartis Institutes for BioMedical Research, Novartis Pharma AG, Forum 1 Novartis Campus, CH-4056 Basel, Switzerland.
Novartis Institutes for BioMedical Research, 250 Massachusetts Avenue, Cambridge, MA 02139, USA.
Sci Rep. 2017 Feb 16;7:42728. doi: 10.1038/srep42728.
Chemogenomic profiling is a powerful and unbiased approach to elucidate pharmacological targets and the mechanism of bioactive compounds. Until recently, genome-wide, high-resolution experiments of this nature have been limited to fungal systems due to lack of mammalian genome-wide deletion collections. With the example of a novel nicotinamide phosphoribosyltransferase (NAMPT) inhibitor, we demonstrate that the CRISPR/Cas9 system enables the generation of transient homo- and heterozygous deletion libraries and allows for the identification of efficacy targets and pathways mediating hypersensitivity and resistance relevant to the compound mechanism of action.
化学生物基因组学分析是一种强大而公正的方法,可用于阐明药理靶点和生物活性化合物的作用机制。直到最近,由于缺乏哺乳动物全基因组缺失文库,此类全基因组、高分辨率实验仅限于真菌系统。我们以一种新型烟酰胺磷酸核糖转移酶(NAMPT)抑制剂为例,证明了 CRISPR/Cas9 系统能够生成瞬时纯合和杂合缺失文库,并可用于鉴定与化合物作用机制相关的敏感性和耐药性的疗效靶点和途径。