Viant Mark R, Elphinstone Davis Jessica, Duffy Cathleen, Engel Jasper, Stenton Craig, Sebire Marion, Katsiadaki Ioanna
School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Centre for Environment, Fisheries and Aquaculture Science, Cefas Weymouth Laboratory, Weymouth, Dorset DT4 8UB, UK.
Metabolites. 2017 Feb 14;7(1):8. doi: 10.3390/metabo7010008.
The endogenous metabolites excreted by organisms into their surrounding environment, termed the exometabolome, are important for many processes including chemical communication. In fish biology, such metabolites are also known to be informative markers of physiological status. While metabolomics is increasingly used to investigate the endogenous biochemistry of organisms, no non-targeted studies of the metabolic complexity of fish exometabolomes have been reported to date. In environmental chemistry, Chemcatcher (Portsmouth, UK) passive samplers have been developed to sample for micro-pollutants in water. Given the importance of the fish exometabolome, we sought to evaluate the capability of Chemcatcher samplers to capture a broad spectrum of endogenous metabolites excreted by fish and to measure these using non-targeted direct infusion mass spectrometry metabolomics. The capabilities of C18 and styrene divinylbenzene reversed-phase sulfonated (SDB-RPS) Empore™ disks for capturing non-polar and polar metabolites, respectively, were compared. Furthermore, we investigated real, complex metabolite mixtures excreted from two model fish species, rainbow trout () and three-spined stickleback (). In total, 344 biological samples and 28 QC samples were analysed, revealing 646 and 215 / peaks from trout and stickleback, respectively. The measured exometabolomes were principally affected by the type of Empore™ (Hemel Hempstead, UK) disk and also by the sampling time. Many peaks were putatively annotated, including several bile acids (e.g., chenodeoxycholate, taurocholate, glycocholate, glycolithocholate, glycochenodeoxycholate, glycodeoxycholate). Collectively these observations show the ability of Chemcatcher passive samplers to capture endogenous metabolites excreted from fish.
生物体内分泌到周围环境中的内源性代谢产物,称为胞外代谢组,对包括化学通讯在内的许多过程都很重要。在鱼类生物学中,这类代谢产物也是生理状态的信息性标志物。虽然代谢组学越来越多地用于研究生物体的内源性生物化学,但迄今为止,尚未有关于鱼类胞外代谢组代谢复杂性的非靶向研究报道。在环境化学中,已开发出Chemcatcher(英国朴茨茅斯)被动采样器用于采集水中的微污染物。鉴于鱼类胞外代谢组的重要性,我们试图评估Chemcatcher采样器捕获鱼类分泌的多种内源性代谢产物的能力,并使用非靶向直接进样质谱代谢组学对其进行测量。比较了C18和苯乙烯二乙烯基苯反相磺化(SDB-RPS)Empore™盘分别捕获非极性和极性代谢产物的能力。此外,我们研究了两种模式鱼类虹鳟()和三刺鱼()分泌的真实、复杂的代谢产物混合物。总共分析了344个生物样品和28个质量控制样品,分别从虹鳟和三刺鱼中检测到646个和215个/峰。测得的胞外代谢组主要受Empore™(英国赫默尔亨普斯特德)盘的类型以及采样时间的影响。许多峰被初步注释,包括几种胆汁酸(如鹅去氧胆酸盐、牛磺胆酸盐、甘氨胆酸盐、甘氨石胆酸盐、甘氨鹅去氧胆酸盐、甘氨脱氧胆酸盐)。这些观察结果共同表明Chemcatcher被动采样器能够捕获鱼类分泌的内源性代谢产物。