Department of Chemical and Biomolecular Engineering, Colburn Laboratory, University of Delaware, 150 Academy Street, Newark, DE 19711, USA.
Soft Matter. 2017 Apr 19;13(16):2907-2918. doi: 10.1039/c6sm02874h.
Using atomistic and coarse-grained molecular dynamics (MD) simulations, we explain the shifts in lower critical solution temperature (LCST)-like phase transitions exhibited by elastin-like peptides (ELPs) upon conjugation to other macromolecules (e.g. collagen-like peptides or CLPs). First, using atomistic simulations, we study ELP oligomers with the sequence (VPGFG) in explicit water, and characterize the LCST-like transition temperature as one at which the ELP oligomers undergo a change in "hydration state". In agreement with past experimental observations of Luo and Kiick, upon anchoring ELP oligomers to a point to mimic ELP oligomers conjugated to another macromolecule, there is an apparent slight shift in the transition temperature to lower values compared to free (unconjugated) ELP oligomers. However, these atomistic simulations are limited to small systems of short ELPs, and as such do not capture the multiple chain aggregation/phase separation observed in experiments of ELPs. Therefore, we utilize phenomenological coarse-grained (CG) MD simulations to probe how conjugating a block of generic-LCST polymer to another rigid unresponsive macromolecular block impacts the transition temperatures at concentrations and length scales larger than atomistic simulations. We find that when multiple LCST polymer chains are conjugated to a rigid unresponsive polymer block, the increased local crowding of the LCST polymers shifts the transition marked by onset of chain aggregation to smaller effective polymer-polymer attraction energies compared to the free LCST polymer chains. The driving force needed for aggregation is reduced in the conjugates compared to free LCST polymer due to reduction in the loss of polymer configurational entropy upon aggregation.
利用原子和粗粒分子动力学(MD)模拟,我们解释了弹性蛋白样肽(ELP)与其他大分子(如胶原样肽或 CLP)缀合后表现出的下临界溶液温度(LCST)类似相变的位移。首先,我们使用原子模拟研究了在明水中具有序列(VPGFG)的 ELP 低聚物,并将 LCST 类似转变温度定义为 ELP 低聚物经历“水合状态”变化的温度。与 Luo 和 Kiick 的过去实验观察结果一致,当将 ELP 低聚物锚固到一个点以模拟与另一种大分子缀合的 ELP 低聚物时,与游离(未缀合)ELP 低聚物相比,转变温度明显向较低值移动。然而,这些原子模拟仅限于短 ELP 的小系统,因此无法捕捉到实验中观察到的多链聚集/相分离。因此,我们利用经验性的粗粒(CG)MD 模拟来探究将通用 LCST 聚合物的块与另一个刚性无响应的大分子块缀合如何影响在比原子模拟更大的浓度和长度尺度下的转变温度。我们发现,当多个 LCST 聚合物链与刚性无响应聚合物块缀合时,LCST 聚合物的局部拥挤增加会将链聚集开始的转变标记为较小的有效聚合物-聚合物吸引力能,与游离的 LCST 聚合物链相比。由于聚集时聚合物构象熵的损失减少,与游离的 LCST 聚合物相比,缀合物中所需的聚集驱动力降低。