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甘蓝(Brassica oleracea L. var. capitata)中一个控制叶片光滑性状基因的精细定位与分析

Fine-Mapping and Analysis of , a Gene Conferring Glossy Trait in Cabbage ( L. var. ).

作者信息

Liu Zezhou, Fang Zhiyuan, Zhuang Mu, Zhang Yangyong, Lv Honghao, Liu Yumei, Li Zhansheng, Sun Peitian, Tang Jun, Liu Dongming, Zhang Zhenxian, Yang Limei

机构信息

Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture, Institute of Vegetables and Flowers - Chinese Academy of Agricultural SciencesBeijing, China; College of Horticulture, China Agricultural UniversityBeijing, China.

Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture, Institute of Vegetables and Flowers - Chinese Academy of Agricultural Sciences Beijing, China.

出版信息

Front Plant Sci. 2017 Feb 20;8:239. doi: 10.3389/fpls.2017.00239. eCollection 2017.

DOI:10.3389/fpls.2017.00239
PMID:28265282
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5316545/
Abstract

Cuticular waxes covering the outer plant surface impart a whitish appearance. Wax-less cabbage mutant shows glossy in leaf surface and plays important roles in riching cabbage germplasm resources and breeding brilliant green cabbage. This is the first report describing the characterization and fine-mapping of a wax biosynthesis gene using a novel glossy mutant. In the present paper, we identified a glossy cabbage mutant (line10Q-961) with a brilliant green phenotype. Genetic analyses indicated that the glossy trait was controlled by a single recessive gene. Preliminary mapping results using an F population containing 189 recessive individuals revealed that the gene was located at the end of chromosome C08. Several new markers closely linked to the target gene were designed according to the cabbage reference genome sequence. Another population of 1,172 recessive F individuals was used to fine-map the gene to a 188.7-kb interval between the C08SSR61 simple sequence repeat marker and the end of chromosome C08. There were 33 genes located in this region. According to gene annotation and homology analyses, the gene, which is a homolog of in , was the most likely candidate for the gene. Its coding and promoter regions were sequenced, which indicated that the RNA splice site was altered because of a 2,722-bp insertion in the first intron of in the glossy mutant. Based on the FGENESH 2.6 prediction and sequence alignments, the PLN02869 domain, which controls fatty aldehyde decarbonylase activity, was absent from the gene of the 10Q-961 glossy mutant. We inferred that the inserted sequence in may result in the glossy cabbage mutant. This study represents the first step toward the characterization of cuticular wax biosynthesis in , and may contribute to the breeding of new cabbage varieties exhibiting a brilliant green phenotype.

摘要

覆盖植物外表的表皮蜡质使其呈现出白色外观。无蜡质的甘蓝突变体叶片表面有光泽,在丰富甘蓝种质资源和培育亮绿色甘蓝品种方面发挥着重要作用。这是首次报道利用一个新的有光泽突变体对蜡质生物合成基因进行表征和精细定位。在本文中,我们鉴定出一个具有亮绿色表型的有光泽甘蓝突变体(品系10Q - 961)。遗传分析表明,该有光泽性状由单个隐性基因控制。利用包含189个隐性个体的F群体进行初步定位,结果显示该基因位于C08染色体末端。根据甘蓝参考基因组序列设计了几个与目标基因紧密连锁的新标记。另一个由1172个隐性F个体组成的群体用于将该基因精细定位到C08SSR61简单序列重复标记与C08染色体末端之间188.7 kb的区间内。该区域有33个基因。根据基因注释和同源性分析,该基因是拟南芥中一个基因的同源基因,最有可能是目标基因。对其编码区和启动子区进行测序,结果表明由于有光泽突变体中该基因第一个内含子中有一个2722 bp的插入,导致RNA剪接位点发生改变。基于FGENESH 2.6预测和序列比对,10Q - 961有光泽突变体的该基因中不存在控制脂肪醛脱羰酶活性的PLN02869结构域。我们推断该基因中的插入序列可能导致了有光泽甘蓝突变体的产生。本研究是对甘蓝表皮蜡质生物合成进行表征的第一步,可能有助于培育具有亮绿色表型的甘蓝新品种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/7330d80e89a7/fpls-08-00239-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/c9e2d860b774/fpls-08-00239-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/cfa8ecac16ce/fpls-08-00239-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/36155b83f240/fpls-08-00239-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/8acf079435ff/fpls-08-00239-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/3f63b2281b26/fpls-08-00239-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/0816c5b8856e/fpls-08-00239-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/2718a6be2ecb/fpls-08-00239-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/7330d80e89a7/fpls-08-00239-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/c9e2d860b774/fpls-08-00239-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/cfa8ecac16ce/fpls-08-00239-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/36155b83f240/fpls-08-00239-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/8acf079435ff/fpls-08-00239-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/3f63b2281b26/fpls-08-00239-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/0816c5b8856e/fpls-08-00239-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/2718a6be2ecb/fpls-08-00239-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aeb/5316545/7330d80e89a7/fpls-08-00239-g008.jpg

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