• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

BFPTool:一种用于生物膜力探针实验分析的软件工具。

BFPTool: a software tool for analysis of Biomembrane Force Probe experiments.

作者信息

Šmít Daniel, Fouquet Coralie, Doulazmi Mohamed, Pincet Frédéric, Trembleau Alain, Zapotocky Martin

机构信息

Institute of Physiology, Czech Academy of Sciences, Vídeňská 1083, Prague, 14220 Czech Republic.

Institute of Biophysics and Informatics, First Faculty of Medicine, Charles University in Prague, Kateřinská 2, Prague, 12000 Czech Republic.

出版信息

BMC Biophys. 2017 Feb 13;10:2. doi: 10.1186/s13628-016-0033-2. eCollection 2017.

DOI:10.1186/s13628-016-0033-2
PMID:28289540
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5304404/
Abstract

BACKGROUND

The Biomembrane Force Probe is an approachable experimental technique commonly used for single-molecule force spectroscopy and experiments on biological interfaces. The technique operates in the range of forces from 0.1 pN to 1000 pN. Experiments are typically repeated many times, conditions are often not optimal, the captured video can be unstable and lose focus; this makes efficient analysis challenging, while out-of-the-box non-proprietary solutions are not freely available.

RESULTS

This dedicated tool was developed to integrate and simplify the image processing and analysis of videomicroscopy recordings from BFP experiments. A novel processing feature, allowing the tracking of the pipette, was incorporated to address a limitation of preceding methods. Emphasis was placed on versatility and comprehensible user interface implemented in a graphical form.

CONCLUSIONS

An integrated analytical tool was implemented to provide a faster, simpler and more convenient way to process and analyse BFP experiments.

摘要

背景

生物膜力探针是一种易于使用的实验技术,常用于单分子力谱和生物界面实验。该技术在0.1皮牛至1000皮牛的力范围内运行。实验通常会重复多次,条件往往不理想,捕获的视频可能不稳定且失焦;这使得高效分析具有挑战性,同时现成的非专有解决方案并非免费可得。

结果

开发了这个专用工具,以整合和简化生物膜力探针实验视频显微镜记录的图像处理和分析。纳入了一项新颖的处理功能,允许跟踪移液器,以解决先前方法的局限性。重点在于以图形形式实现的通用性和易于理解的用户界面。

结论

实施了一个集成分析工具,以提供一种更快、更简单、更方便的方式来处理和分析生物膜力探针实验。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/fbe95623f610/13628_2016_33_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/0b0c64331912/13628_2016_33_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/decd12518fac/13628_2016_33_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/d875b58a9cd4/13628_2016_33_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/b0b669a003c0/13628_2016_33_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/fbe95623f610/13628_2016_33_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/0b0c64331912/13628_2016_33_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/decd12518fac/13628_2016_33_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/d875b58a9cd4/13628_2016_33_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/b0b669a003c0/13628_2016_33_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff62/5304404/fbe95623f610/13628_2016_33_Fig5_HTML.jpg

相似文献

1
BFPTool: a software tool for analysis of Biomembrane Force Probe experiments.BFPTool:一种用于生物膜力探针实验分析的软件工具。
BMC Biophys. 2017 Feb 13;10:2. doi: 10.1186/s13628-016-0033-2. eCollection 2017.
2
Biomembrane force probe (BFP): Design, advancements, and recent applications to live-cell mechanobiology.生物膜力探针(BFP):设计、进展及在活细胞力学生物学中的最新应用
Exploration (Beijing). 2023 Jul 11;3(4):20230004. doi: 10.1002/EXP.20230004. eCollection 2023 Aug.
3
Single-molecule Force Spectroscopy on Biomembrane Force Probe to Characterize Force-dependent Bond Lifetimes of Receptor-ligand Interactions on Living Cells.基于生物膜力探针的单分子力谱技术用于表征活细胞上受体-配体相互作用的力依赖键寿命
Bio Protoc. 2022 Oct 20;12(20). doi: 10.21769/BioProtoc.4534.
4
Membrane Tubulation with a Biomembrane Force Probe.使用生物膜力探针进行膜微管形成
Membranes (Basel). 2023 Dec 18;13(12):910. doi: 10.3390/membranes13120910.
5
Molecular Tension Probes for Imaging Forces at the Cell Surface.用于在细胞表面成像力的分子张力探针。
Acc Chem Res. 2017 Dec 19;50(12):2915-2924. doi: 10.1021/acs.accounts.7b00305. Epub 2017 Nov 21.
6
Two-Dimensional Analysis of Cross-Junctional Molecular Interaction by Force Probes.利用力探针进行交叉连接分子相互作用的二维分析。
Methods Mol Biol. 2017;1584:231-258. doi: 10.1007/978-1-4939-6881-7_15.
7
Single-Molecule Force Spectroscopy: Experiments, Analysis, and Simulations.单分子力谱学:实验、分析与模拟
Methods Mol Biol. 2019;1886:163-189. doi: 10.1007/978-1-4939-8894-5_9.
8
A nonlinear characteristic regime of biomembrane force probe.生物膜力探针的非线性特征状态。
J Biomech. 2011 Feb 24;44(4):662-8. doi: 10.1016/j.jbiomech.2010.11.005. Epub 2010 Nov 19.
9
Dynamic Force Spectroscopy Analysis on the Redox States of Protein Disulphide Bonds.蛋白质二硫键氧化还原状态的动态力谱分析
Methods Mol Biol. 2019;1967:115-131. doi: 10.1007/978-1-4939-9187-7_7.
10
Whispering-gallery acoustic sensing: characterization of mesoscopic films and scanning probe microscopy applications.回音壁声学传感:介观薄膜的表征及扫描探针显微镜应用
Rev Sci Instrum. 2011 Sep;82(9):093704. doi: 10.1063/1.3635224.

引用本文的文献

1
Membrane Tubulation with a Biomembrane Force Probe.使用生物膜力探针进行膜微管形成
Membranes (Basel). 2023 Dec 18;13(12):910. doi: 10.3390/membranes13120910.
2
Biomembrane force probe (BFP): Design, advancements, and recent applications to live-cell mechanobiology.生物膜力探针(BFP):设计、进展及在活细胞力学生物学中的最新应用
Exploration (Beijing). 2023 Jul 11;3(4):20230004. doi: 10.1002/EXP.20230004. eCollection 2023 Aug.
3
Preparation and Manipulation of Olfactory Epithelium Explant Cultures for Measurement of the Mechanical Tension of Individual Axons Using the Biomembrane Force Probe.

本文引用的文献

1
Extensible visualization and analysis for multidimensional images using Vaa3D.使用 Vaa3D 进行多维图像的可扩展可视化和分析。
Nat Protoc. 2014 Jan;9(1):193-208. doi: 10.1038/nprot.2014.011. Epub 2014 Jan 2.
2
Icy: an open bioimage informatics platform for extended reproducible research.Icy:一个开放的生物影像信息学平台,用于扩展可重复研究。
Nat Methods. 2012 Jun 28;9(7):690-6. doi: 10.1038/nmeth.2075.
3
Fiji: an open-source platform for biological-image analysis.斐济:一个用于生物影像分析的开源平台。
使用生物膜力探针测量单个轴突机械张力的嗅上皮外植体培养物的制备与操作
Bio Protoc. 2019 Apr 20;9(8). doi: 10.21769/BioProtoc.3213.
4
Review: Bioengineering strategies to probe T cell mechanobiology.综述:用于探究T细胞力学生物学的生物工程策略。
APL Bioeng. 2018 Mar 29;2(2):021501. doi: 10.1063/1.5006599. eCollection 2018 Jun.
5
Micropipette force probe to quantify single-cell force generation: application to T-cell activation.用于量化单细胞力产生的微量移液器力探针:在T细胞活化中的应用。
Mol Biol Cell. 2017 Nov 7;28(23):3229-3239. doi: 10.1091/mbc.E17-06-0385. Epub 2017 Sep 20.
6
Axon tension regulates fasciculation/defasciculation through the control of axon shaft zippering.轴突张力通过控制轴突干拉链来调节轴突成束/解束。
Elife. 2017 Apr 19;6:e19907. doi: 10.7554/eLife.19907.
Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019.
4
The role of adhesion energy in controlling cell-cell contacts.黏附能在控制细胞-细胞接触中的作用。
Curr Opin Cell Biol. 2011 Oct;23(5):508-14. doi: 10.1016/j.ceb.2011.07.004. Epub 2011 Jul 30.
5
Force generation upon T cell receptor engagement.T 细胞受体结合时的力的产生。
PLoS One. 2011 May 10;6(5):e19680. doi: 10.1371/journal.pone.0019680.
6
Force spectroscopy of a single artificial biomolecule bond: the Kramers' high-barrier limit holds close to the critical force.单个人工生物分子键的力谱:克莱默斯高势垒极限在临界力附近成立。
J Chem Phys. 2009 Feb 7;130(5):051103. doi: 10.1063/1.3077010.
7
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.细胞图像分析软件:用于基于复杂图像的筛选的数据探索与分析软件。
BMC Bioinformatics. 2008 Nov 15;9:482. doi: 10.1186/1471-2105-9-482.
8
Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.单分子力谱实验的理论、分析与解释
Proc Natl Acad Sci U S A. 2008 Oct 14;105(41):15755-60. doi: 10.1073/pnas.0806085105. Epub 2008 Oct 13.
9
Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy.单分子力谱学:光镊、磁镊和原子力显微镜。
Nat Methods. 2008 Jun;5(6):491-505. doi: 10.1038/nmeth.1218.
10
Monitoring receptor-ligand interactions between surfaces by thermal fluctuations.通过热涨落监测表面之间的受体-配体相互作用。
Biophys J. 2008 Jan 15;94(2):694-701. doi: 10.1529/biophysj.107.117895. Epub 2007 Sep 21.