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鸡早期生长过程中腿部肌肉的转录组概况

Transcriptomic profile of leg muscle during early growth in chicken.

作者信息

Xue Qian, Zhang Genxi, Li Tingting, Ling Jiaojiao, Zhang Xiangqian, Wang Jinyu

机构信息

College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China.

Key Laboratory for Animal Genetics, Breeding, Reproduction and Molecular Design of Jiangsu Province, Yangzhou, Jiangsu, China.

出版信息

PLoS One. 2017 Mar 14;12(3):e0173824. doi: 10.1371/journal.pone.0173824. eCollection 2017.

Abstract

The early growth pattern, especially the age of peak growth, of broilers affects the time to market and slaughter weight, which in turn affect the profitability of the poultry industry. However, the underlying mechanisms regulating chicken growth and development have rarely been studied. This study aimed to identify candidate genes involved in chicken growth and investigated the potential regulatory mechanisms of early growth in chicken. RNA sequencing was applied to compare the transcriptomes of chicken muscle tissues at three developmental stages during early growth. In total, 978 differentially expressed genes (DEGs) (fold change ≥ 2; false discovery rate < 0.05) were detected by pairwise comparison. Functional analysis showed that the DEGs are mainly involved in the processes of cell growth, muscle development, and cellular activities (such as junction, migration, assembly, differentiation, and proliferation). Many of the DEGs are well known to be related to chicken growth, such as MYOD1, GH, IGF2BP2, IGFBP3, SMYD1, CEBPB, FGF2, and IGFBP5. KEGG pathway analysis identified that the DEGs were significantly enriched in five pathways (P < 0.1) related to growth and development: extracellular matrix-receptor interaction, focal adhesion, tight junction, insulin signaling pathway, and regulation of the actin cytoskeleton. A total of 42 DEGs assigned to these pathways are potential candidate genes inducing the difference in growth among the three developmental stages, such as MYH10, FGF2, FGF16, FN1, CFL2, MAPK9, IRS1, PHKA1, PHKB, and PHKG1. Thus, our study identified a series of genes and several pathways that may participate in the regulation of early growth in chicken. These results should serve as an important resource revealing the molecular basis of chicken growth and development.

摘要

肉鸡的早期生长模式,尤其是生长高峰期的年龄,会影响上市时间和屠宰体重,进而影响家禽业的盈利能力。然而,调节鸡生长发育的潜在机制鲜有研究。本研究旨在鉴定参与鸡生长的候选基因,并探究鸡早期生长的潜在调控机制。应用RNA测序技术比较鸡早期生长三个发育阶段肌肉组织的转录组。通过两两比较,共检测到978个差异表达基因(DEGs)(倍数变化≥2;错误发现率<0.05)。功能分析表明,这些DEGs主要参与细胞生长、肌肉发育和细胞活动(如连接、迁移、组装、分化和增殖)过程。许多DEGs众所周知与鸡的生长有关,如MYOD1、GH、IGF2BP2、IGFBP3、SMYD1、CEBPB、FGF2和IGFBP5。KEGG通路分析确定,这些DEGs在与生长发育相关的五条通路(P<0.1)中显著富集:细胞外基质-受体相互作用、粘着斑、紧密连接、胰岛素信号通路和肌动蛋白细胞骨架的调节。共有42个分配到这些通路的DEGs是导致三个发育阶段生长差异的潜在候选基因,如MYH10、FGF2、FGF16、FN1、CFL2、MAPK9、IRS1、PHKA1、PHKB和PHKG1。因此,我们的研究鉴定出了一系列可能参与鸡早期生长调控的基因和几条通路。这些结果应作为揭示鸡生长发育分子基础的重要资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/943f/5349469/b97345db9a86/pone.0173824.g001.jpg

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