Dohrmann Martin, Kelley Christopher, Kelly Michelle, Pisera Andrzej, Hooper John N A, Reiswig Henry M
Department of Earth & Environmental Sciences, Palaeontology & Geobiology, Molecular Geo- & Palaeobiology Lab, Ludwig-Maximilians-University Munich, Richard-Wagner-Str. 10, 80333 Munich, Germany.
Hawaii Undersea Research Laboratory, University of Hawaii at Manoa, 1000 Pope Rd, MSB 229, Honolulu, 96822 HI USA.
Front Zool. 2017 Mar 21;14:18. doi: 10.1186/s12983-017-0191-3. eCollection 2017.
Glass sponges (Class Hexactinellida) are important components of deep-sea ecosystems and are of interest from geological and materials science perspectives. The reconstruction of their phylogeny with molecular data has only recently begun and shows a better agreement with morphology-based systematics than is typical for other sponge groups, likely because of a greater number of informative morphological characters. However, inconsistencies remain that have far-reaching implications for hypotheses about the evolution of their major skeletal construction types (body plans). Furthermore, less than half of all described extant genera have been sampled for molecular systematics, and several taxa important for understanding skeletal evolution are still missing. Increased taxon sampling for molecular phylogenetics of this group is therefore urgently needed. However, due to their remote habitat and often poorly preserved museum material, sequencing all 126 currently recognized extant genera will be difficult to achieve. Utilizing morphological data to incorporate unsequenced taxa into an integrative systematics framework therefore holds great promise, but it is unclear which methodological approach best suits this task.
Here, we increase the taxon sampling of four previously established molecular markers (18S, 28S, and 16S ribosomal DNA, as well as cytochrome oxidase subunit I) by 12 genera, for the first time including representatives of the order Aulocalycoida and the type genus of Dactylocalycidae, taxa that are key to understanding hexactinellid body plan evolution. Phylogenetic analyses suggest that Aulocalycoida is diphyletic and provide further support for the paraphyly of order Hexactinosida; hence these orders are abolished from the Linnean classification. We further assembled morphological character matrices to integrate so far unsequenced genera into phylogenetic analyses in maximum parsimony (MP), maximum likelihood (ML), Bayesian, and morphology-based binning frameworks. We find that of these four approaches, total-evidence analysis using MP gave the most plausible results concerning congruence with existing phylogenetic and taxonomic hypotheses, whereas the other methods, especially ML and binning, performed more poorly. We use our total-evidence phylogeny of all extant glass sponge genera for ancestral state reconstruction of morphological characters in MP and ML frameworks, gaining new insights into the evolution of major hexactinellid body plans and other characters such as different spicule types.
Our study demonstrates how a comprehensive, albeit in some parts provisional, phylogeny of a larger taxon can be achieved with an integrative approach utilizing molecular and morphological data, and how this can be used as a basis for understanding phenotypic evolution. The datasets and associated trees presented here are intended as a resource and starting point for future work on glass sponge evolution.
玻璃海绵(六放海绵纲)是深海生态系统的重要组成部分,从地质学和材料科学角度来看都备受关注。利用分子数据重建其系统发育关系的工作直到最近才开始,并且与基于形态学的分类学相比,显示出更好的一致性,这在其他海绵类群中并不常见,可能是因为有更多信息丰富的形态学特征。然而,仍然存在一些不一致之处,这对关于其主要骨骼构造类型(体型)进化的假说有着深远影响。此外,在所有已描述的现存属中,进行分子系统学采样的不到一半,并且对于理解骨骼进化很重要的几个分类单元仍然缺失。因此,迫切需要增加该类群分子系统发育学的分类单元采样。然而,由于它们的栖息地偏远且博物馆标本往往保存不佳,对目前公认的所有126个现存属进行测序将很难实现。因此,利用形态学数据将未测序的分类单元纳入综合系统学框架具有很大的前景,但尚不清楚哪种方法最适合这项任务。
在这里,我们将四个先前建立的分子标记(18S、28S和16S核糖体DNA以及细胞色素氧化酶亚基I)的分类单元采样增加了12个属,首次纳入了奥氏海绵目和指杯海绵科模式属的代表,这些分类单元是理解六放海绵体型进化的关键。系统发育分析表明奥氏海绵目是并系的,并为六放星海绵目并系性提供了进一步支持;因此,这些目从林奈分类法中废除。我们还组装了形态学特征矩阵,以便在最大简约法(MP)、最大似然法(ML)、贝叶斯法和基于形态学的分箱框架下,将迄今未测序的属纳入系统发育分析。我们发现,在这四种方法中,使用MP的全证据分析在与现有系统发育和分类学假说的一致性方面给出了最合理的结果,而其他方法,尤其是ML和分箱法,表现较差。我们利用所有现存玻璃海绵属的全证据系统发育关系,在MP和ML框架下对形态学特征进行祖先状态重建,从而对主要六放海绵体型以及其他特征(如不同的骨针类型)的进化有了新的认识。
我们的研究展示了如何通过利用分子和形态学数据的综合方法实现一个更大分类单元的全面(尽管在某些部分是临时的)系统发育关系,以及如何将其用作理解表型进化的基础。这里展示的数据集和相关树旨在作为玻璃海绵进化未来研究的资源和起点。