Carlson Markus A, Haddad Bassam G, Weis Amanda J, Blackwood Colby S, Shelton Catherine D, Wuerth Michelle E, Walter Justin D, Spiegel Paul Clint
Department of Chemistry, Western Washington University, Bellingham, WA, USA.
FEBS J. 2017 Jun;284(11):1631-1643. doi: 10.1111/febs.14067. Epub 2017 Apr 10.
Ribosomal protein L7/L12 is associated with translation initiation, elongation, and termination by the 70S ribosome. The guanosine 5' triphosphate hydrolase (GTPase) activity of elongation factor G (EF-G) requires the presence of L7/L12, which is critical for ribosomal translocation. Here, we have developed new methods for the complete depletion of L7/L12 from Escherichia coli 70S ribosomes to analyze the effect of L7/L12 on the activities of the GTPase factors EF-G, RF3, IF2, and LepA. Upon removal of L7/L12 from ribosomes, the GTPase activities of EF-G, RF3, and IF2 decreased to basal levels, while the activity of LepA decreased marginally. Upon reconstitution of ribosomes with recombinant L12, the GTPase activities of all GTPases returned to full activity. Moreover, ribosome binding assays indicated that EF-G, RF3, and IF2 require L7/L12 for stable binding in the GTP state, and LepA retained > 50% binding. Lastly, an EF-G∆G' truncation mutant possessed ribosome-dependent GTPase activity, which was insensitive to L7/L12. Our results indicate that L7/L12 is required for stable binding of ribosome-dependent GTPases that harbor direct interactions to the L7/L12 C-terminal domains, either through a G' domain (EF-G, RF3) or a unique N-terminal domain (IF2). Furthermore, we hypothesize this interaction is concomitant with counterclockwise ribosomal intersubunit rotation, which is required for translocation, initiation, and post-termination.
核糖体蛋白L7/L12与70S核糖体的翻译起始、延伸和终止相关。延伸因子G(EF-G)的鸟苷5′-三磷酸水解酶(GTPase)活性需要L7/L12的存在,这对核糖体转位至关重要。在此,我们开发了新方法以从大肠杆菌70S核糖体中完全去除L7/L12,从而分析L7/L12对GTPase因子EF-G、RF3、IF2和LepA活性的影响。从核糖体中去除L7/L12后,EF-G、RF3和IF2的GTPase活性降至基础水平,而LepA的活性略有下降。用重组L12重构核糖体后,所有GTPase的GTPase活性恢复到完全活性。此外,核糖体结合试验表明,EF-G、RF3和IF2在GTP状态下稳定结合需要L7/L12,而LepA保留了>50%的结合。最后,一个EF-G∆G'截短突变体具有核糖体依赖性GTPase活性,该活性对L7/L12不敏感。我们的结果表明,L7/L12是核糖体依赖性GTPase稳定结合所必需的,这些GTPase通过G'结构域(EF-G、RF3)或独特的N端结构域(IF2)与L7/L12的C端结构域直接相互作用。此外,我们推测这种相互作用与核糖体亚基逆时针旋转同时发生,这是转位、起始和终止后所必需的。