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Towards an Obesity-Cancer Knowledge Base: Biomedical Entity Identification and Relation Detection.迈向肥胖-癌症知识库:生物医学实体识别与关系检测
Proceedings (IEEE Int Conf Bioinformatics Biomed). 2016 Dec;2016:1081-1088. doi: 10.1109/BIBM.2016.7822672. Epub 2017 Jan 19.
2
Consumers' Use of UMLS Concepts on Social Media: Diabetes-Related Textual Data Analysis in Blog and Social Q&A Sites.消费者在社交媒体上对统一医学语言系统(UMLS)概念的使用:博客和社交问答网站中与糖尿病相关的文本数据分析
JMIR Med Inform. 2016 Nov 24;4(4):e41. doi: 10.2196/medinform.5748.
3
Automated learning of domain taxonomies from text using background knowledge.利用背景知识从文本中自动学习领域分类法。
J Biomed Inform. 2016 Oct;63:295-306. doi: 10.1016/j.jbi.2016.09.002. Epub 2016 Sep 3.
4
Interactive use of online health resources: a comparison of consumer and professional questions.在线健康资源的交互使用:消费者问题与专业问题的比较
J Am Med Inform Assoc. 2016 Jul;23(4):802-11. doi: 10.1093/jamia/ocw024. Epub 2016 May 4.
5
Similarity-Based Recommendation of New Concepts to a Terminology.基于相似度向术语表推荐新概念
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J Am Med Inform Assoc. 2016 Mar;23(2):269-75. doi: 10.1093/jamia/ocv062. Epub 2015 Aug 11.
7
Mining consumer health vocabulary from community-generated text.从社区生成的文本中挖掘消费者健康词汇。
AMIA Annu Symp Proc. 2014 Nov 14;2014:1150-9. eCollection 2014.
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Identifying medical terms in patient-authored text: a crowdsourcing-based approach.识别患者撰写文本中的医学术语:基于众包的方法。
J Am Med Inform Assoc. 2013 Nov-Dec;20(6):1120-7. doi: 10.1136/amiajnl-2012-001110. Epub 2013 May 5.
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Utilizing RxNorm to support practical computing applications: capturing medication history in live electronic health records.利用 RxNorm 支持实际计算应用:在实时电子健康记录中捕获用药史。
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通过挖掘一个社交问答网站丰富消费者健康词汇:一种基于相似度的方法。

Enriching consumer health vocabulary through mining a social Q&A site: A similarity-based approach.

作者信息

He Zhe, Chen Zhiwei, Oh Sanghee, Hou Jinghui, Bian Jiang

机构信息

School of Information, Florida State University, Tallahassee, FL 32306, USA; Institute for Successful Longevity, Florida State University, Tallahassee, FL 32306, USA.

Department of Computer Science, Florida State University, Tallahassee, FL 32306, USA.

出版信息

J Biomed Inform. 2017 May;69:75-85. doi: 10.1016/j.jbi.2017.03.016. Epub 2017 Mar 27.

DOI:10.1016/j.jbi.2017.03.016
PMID:28359728
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5488691/
Abstract

The widely known vocabulary gap between health consumers and healthcare professionals hinders information seeking and health dialogue of consumers on end-user health applications. The Open Access and Collaborative Consumer Health Vocabulary (OAC CHV), which contains health-related terms used by lay consumers, has been created to bridge such a gap. Specifically, the OAC CHV facilitates consumers' health information retrieval by enabling consumer-facing health applications to translate between professional language and consumer friendly language. To keep up with the constantly evolving medical knowledge and language use, new terms need to be identified and added to the OAC CHV. User-generated content on social media, including social question and answer (social Q&A) sites, afford us an enormous opportunity in mining consumer health terms. Existing methods of identifying new consumer terms from text typically use ad-hoc lexical syntactic patterns and human review. Our study extends an existing method by extracting n-grams from a social Q&A textual corpus and representing them with a rich set of contextual and syntactic features. Using K-means clustering, our method, simiTerm, was able to identify terms that are both contextually and syntactically similar to the existing OAC CHV terms. We tested our method on social Q&A corpora on two disease domains: diabetes and cancer. Our method outperformed three baseline ranking methods. A post-hoc qualitative evaluation by human experts further validated that our method can effectively identify meaningful new consumer terms on social Q&A.

摘要

健康消费者与医疗保健专业人员之间广为人知的词汇差距,阻碍了消费者在终端用户健康应用程序上寻求信息和进行健康对话。开放获取与协作式消费者健康词汇表(OAC CHV)应运而生,它包含普通消费者使用的与健康相关的术语,旨在弥合这一差距。具体而言,OAC CHV通过使面向消费者的健康应用程序能够在专业语言和消费者友好语言之间进行翻译,促进了消费者的健康信息检索。为了跟上不断发展的医学知识和语言使用情况,需要识别新术语并将其添加到OAC CHV中。社交媒体上的用户生成内容,包括社交问答(social Q&A)网站,为我们挖掘消费者健康术语提供了巨大机会。从文本中识别新消费者术语的现有方法通常使用临时的词汇句法模式和人工审核。我们的研究扩展了一种现有方法,即从社交问答文本语料库中提取n元语法并用丰富的上下文和句法特征来表示它们。使用K均值聚类,我们的方法simiTerm能够识别出在上下文和句法上与现有OAC CHV术语相似的术语。我们在两个疾病领域(糖尿病和癌症)的社交问答语料库上测试了我们的方法。我们的方法优于三种基线排序方法。人类专家进行的事后定性评估进一步验证了我们的方法能够有效地在社交问答中识别出有意义的新消费者术语。