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Cpipe:一个用于基于序列和结构的半胱氨酸残基分析的综合计算平台。

Cpipe: a comprehensive computational platform for sequence and structure-based analyses of Cysteine residues.

机构信息

Department of Agricultural Biotechnology, Akdeniz University, Antalya, 07058, Turkey.

R&D Department, Explora Biotech Srl., Venice, 30172, Italy.

出版信息

Bioinformatics. 2017 Aug 1;33(15):2395-2396. doi: 10.1093/bioinformatics/btx181.

Abstract

SUMMARY

Due to their chemical plasticity, Cysteine residues (Cys) can serve many different functions. Identification and classification of reactive Cys isn't a trivial job: currently, no available tool exists for an all-round, comprehensive (inclusive of all different functional types) analysis of Cys; herein we present a computational platform called Cp i pe, dedicated to this task: it implements state-of-the art protocols, elaborating and displaying a wealth of information, sufficiently orthogonal to allow a thorough evaluation of all major aspects of Cys reactivity.

AVAILABILITY AND IMPLEMENTATION

Cp i pe is implemented in Python and freely available at http://cpipe.explora-biotech.com/cpipe/start.py . All major browsers are supported.

CONTACT

s.marino@explora-biotech.com.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

摘要

由于半胱氨酸残基(Cys)的化学可塑性,它们可以发挥许多不同的功能。识别和分类反应性 Cys 并非易事:目前,尚无可用的工具可全面、综合(包括所有不同功能类型)地分析 Cys;在此,我们介绍了一个名为 Cp i pe 的计算平台,专门用于解决此任务:它实现了最先进的协议,详细展示了丰富的信息,具有足够的正交性,可以彻底评估 Cys 反应性的所有主要方面。

可用性和实现

Cp i pe 是用 Python 编写的,并可在 http://cpipe.explora-biotech.com/cpipe/start.py 免费获得。支持所有主流浏览器。

联系人

s.marino@explora-biotech.com

补充信息

补充数据可在Bioinformatics 在线获得。

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