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用于改进细胞工厂的代谢系统建模

Metabolic systems modeling for cell factories improvement.

作者信息

Chen Po-Wei, Theisen Matthew K, Liao James C

机构信息

Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA 90095, United States.

Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, CA 90095, United States; Academia Sinica, Taipei 11529, Taiwan.

出版信息

Curr Opin Biotechnol. 2017 Aug;46:114-119. doi: 10.1016/j.copbio.2017.02.005. Epub 2017 Apr 4.

Abstract

Techniques for modeling microbial bioproduction systems have evolved over many decades. Here, we survey recent literature and focus on modeling approaches for improving bioproduction. These techniques from systems biology are based on different methodologies, starting from stoichiometry only to various stoichiometry with kinetics approaches that address different issues in metabolic systems. Techniques to overcome unknown kinetic parameters using random sampling have emerged to address meaningful questions. Among those questions, pathway robustness seems to be an important issue for metabolic engineering. We also discuss the increasing significance of databases in biology and their potential impact for biotechnology.

摘要

微生物生物生产系统的建模技术已经发展了数十年。在此,我们综述近期文献,并聚焦于改善生物生产的建模方法。这些来自系统生物学的技术基于不同的方法,从仅基于化学计量学发展到结合动力学方法的各种化学计量学,以解决代谢系统中的不同问题。利用随机抽样克服未知动力学参数的技术已经出现,以解决有意义的问题。在这些问题中,途径稳健性似乎是代谢工程的一个重要问题。我们还讨论了生物学中数据库日益增长的重要性及其对生物技术的潜在影响。

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