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DNA序列重复引发粗糙脉孢菌中的基因失活。

DNA sequence duplications trigger gene inactivation in Neurospora crassa.

作者信息

Selker E U, Garrett P W

机构信息

Institute of Molecular Biology, University of Oregon, Eugene 97403.

出版信息

Proc Natl Acad Sci U S A. 1988 Sep;85(18):6870-4. doi: 10.1073/pnas.85.18.6870.

DOI:10.1073/pnas.85.18.6870
PMID:2842795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC282080/
Abstract

Transforming sequences are faithfully replicated in vegetative cells of Neurospora but are typically subject at high frequency to sequence alterations and methylation in the period between fertilization and nuclear fusion. Previous work showed a correlation between the occurrence of these radical changes, referred to by the acronym RIP, and the presence of sequence duplications resulting from the introduced DNA. Various possible causes for the RIP process were investigated. Introduction of a single copy of a DNA fragment containing the Neurospora am gene into a strain having a deletion of this DNA did not lead to RIP, whereas introduction of two or more copies of the same fragment did. A conventional cross of strains having single copies of am at unlinked chromosomal locations was used to build a strain duplicated for am. Both copies of the duplicated gene were subject to the RIP process in crosses of this strain. We conclude that sequence duplications, per se, trigger RIP.

摘要

转化序列在粗糙脉孢菌的营养细胞中能被忠实地复制,但在受精和核融合之间的时期通常会高频地发生序列改变和甲基化。先前的研究表明,这些被简称为RIP的剧烈变化的发生与导入DNA产生的序列重复的存在之间存在关联。研究了RIP过程的各种可能原因。将含有粗糙脉孢菌am基因的单个DNA片段导入缺失该DNA的菌株中不会导致RIP,而导入该相同片段的两个或更多个拷贝则会导致RIP。使用在不连锁的染色体位置具有am单拷贝的菌株进行常规杂交,构建了一个am基因重复的菌株。在该菌株的杂交中,重复基因的两个拷贝都经历了RIP过程。我们得出结论,序列重复本身会触发RIP。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/8058f95d2bb0/pnas00297-0305-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/7880889f2c2f/pnas00297-0303-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/421136334178/pnas00297-0303-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/2ab2cd37914c/pnas00297-0303-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/2d33ef7f42f6/pnas00297-0303-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/608570e94e1a/pnas00297-0303-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/e8ca313d81e4/pnas00297-0305-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/7a240f8637ef/pnas00297-0305-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/8058f95d2bb0/pnas00297-0305-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/7880889f2c2f/pnas00297-0303-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/421136334178/pnas00297-0303-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/2ab2cd37914c/pnas00297-0303-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/2d33ef7f42f6/pnas00297-0303-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/608570e94e1a/pnas00297-0303-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/e8ca313d81e4/pnas00297-0305-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/7a240f8637ef/pnas00297-0305-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2acc/282080/8058f95d2bb0/pnas00297-0305-c.jpg

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Gene. 1982 Dec;20(3):387-96. doi: 10.1016/0378-1119(82)90207-4.
2
The complete nucleotide sequence of the Neurospora crassa am (NADP-specific glutamate dehydrogenase) gene.粗糙脉孢菌am(NADP特异性谷氨酸脱氢酶)基因的完整核苷酸序列。
Gene. 1983 Dec;26(2-3):253-60. doi: 10.1016/0378-1119(83)90195-6.
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Transformation of Neurospora crassa with recombinant plasmids containing the cloned glutamate dehydrogenase (am) gene: evidence for autonomous replication of the transforming plasmid.
BMC Genomics. 2024 Apr 5;25(1):347. doi: 10.1186/s12864-024-10198-1.
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A systematic screen for co-option of transposable elements across the fungal kingdom.对真菌界转座元件共选择的系统筛选。
Mob DNA. 2024 Jan 20;15(1):2. doi: 10.1186/s13100-024-00312-1.
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Developing a Temperature-Inducible Transcriptional Rheostat in Neurospora crassa.在粗糙脉孢菌中开发温度诱导的转录变阻器。
mBio. 2023 Feb 28;14(1):e0329122. doi: 10.1128/mbio.03291-22. Epub 2023 Feb 6.
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A chromosome-scale genome assembly of the tomato pathogen reveals a compartmentalized genome architecture and the presence of a dispensable chromosome.番茄病原菌染色体水平基因组组装揭示了分隔的基因组结构和一个可缺失染色体的存在。
Microb Genom. 2022 Apr;8(4). doi: 10.1099/mgen.0.000819.
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Independent breakdown events of the Brassica napus Rlm7 resistance gene including via the off-target impact of a dual-specificity avirulence interaction.油菜 Rlm7 抗性基因的独立断裂事件,包括双特异性无毒互作的非靶标影响。
Mol Plant Pathol. 2022 Jul;23(7):997-1010. doi: 10.1111/mpp.13204. Epub 2022 Mar 6.
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Genome-Wide Analyses of Repeat-Induced Point Mutations in the Ascomycota.子囊菌门中重复序列诱导点突变的全基因组分析。
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用含有克隆的谷氨酸脱氢酶(am)基因的重组质粒转化粗糙脉孢菌:转化质粒自主复制的证据。
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A portable signal causing faithful DNA methylation de novo in Neurospora crassa.一种可在粗糙脉孢菌中引发可靠的从头DNA甲基化的便携式信号。
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