• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

新型细菌门 Calditrichaeota 在海洋沉积物中种类繁多、分布广泛且丰富,并具有降解碎屑蛋白的能力。

The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins.

机构信息

Geomicrobiology, Section for Microbiology, Department of Bioscience, Aarhus University, Denmark.

Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Sweden.

出版信息

Environ Microbiol Rep. 2017 Aug;9(4):397-403. doi: 10.1111/1758-2229.12544. Epub 2017 Jun 27.

DOI:10.1111/1758-2229.12544
PMID:28488795
Abstract

Calditrichaeota is a recently recognized bacterial phylum with three cultured representatives, isolated from hydrothermal vents. Here we expand the phylogeny and ecology of this novel phylum with metagenome-derived and single-cell genomes from six uncultivated bacteria previously not recognized as members of Calditrichaeota. Using 16S rRNA gene sequences from these genomes, we then identified 322 16S rRNA gene sequences from cultivation-independent studies that can now be classified as Calditrichaeota for the first time. This dataset was used to re-analyse a collection of 16S rRNA gene amplicon datasets from marine sediments showing that the Calditrichaeota are globally distributed in the seabed at high abundance, making up to 6.7% of the total bacterial community. This wide distribution and high abundance of Calditrichaeota in cold marine sediment has gone unrecognized until now. All Calditrichaeota genomes show indications of a chemoorganoheterotrophic metabolism with the potential to degrade detrital proteins through the use of extracellular peptidases. Most of the genomes contain genes encoding proteins that confer O tolerance, consistent with the relatively high abundance of Calditrichaeota in surficial bioturbated part of the seabed and, together with the genes encoding extracellular peptidases, suggestive of a general ecophysiological niche for this newly recognized phylum in marine sediment.

摘要

卡尔迪特里奇菌门是最近被认可的细菌门,有三个已培养的代表种,均分离自热液喷口。本研究通过宏基因组和单细胞基因组扩展了该新颖细菌门的系统发育和生态,其中 6 个未培养的细菌之前未被认为是卡尔迪特里奇菌门的成员。使用这些基因组的 16S rRNA 基因序列,我们从培养独立性研究中鉴定了 322 个 16S rRNA 基因序列,这些序列现在可以首次被归类为卡尔迪特里奇菌门。该数据集用于重新分析了一系列来自海洋沉积物的 16S rRNA 基因扩增子数据集,结果表明卡尔迪特里奇菌门在海底的全球分布广泛,丰度高达总细菌群落的 6.7%。直到现在,卡尔迪特里奇菌门在冷海洋沉积物中的广泛分布和高丰度一直未被识别。所有卡尔迪特里奇菌门的基因组都显示出化能有机异养代谢的迹象,具有通过使用细胞外肽酶降解碎屑蛋白的潜力。大多数基因组包含编码赋予 O 耐受性的蛋白的基因,这与卡尔迪特里奇菌门在海底表生生物扰动区的相对高丰度一致,并且与编码细胞外肽酶的基因一起,暗示了这个新被认可的海洋沉积物细菌门的一般生态生理生态位。

相似文献

1
The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins.新型细菌门 Calditrichaeota 在海洋沉积物中种类繁多、分布广泛且丰富,并具有降解碎屑蛋白的能力。
Environ Microbiol Rep. 2017 Aug;9(4):397-403. doi: 10.1111/1758-2229.12544. Epub 2017 Jun 27.
2
Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay.奥胡斯湾海洋沉积物中硫酸盐还原微生物群落的深度分布与组装
Appl Environ Microbiol. 2017 Nov 16;83(23). doi: 10.1128/AEM.01547-17. Print 2017 Dec 1.
3
Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota.揭示广泛分布的 Sumerlaeota 的适应机制和进化历史。
mBio. 2021 Mar 30;12(2):e00350-21. doi: 10.1128/mBio.00350-21.
4
Description of the first marine-isolated member of the under-represented phylum , and the environmental distribution and ecogenomics of ord. nov.未充分表征的门的首个海洋分离成员的描述,以及新目级分类单元的环境分布和生态基因组学
mSystems. 2024 Dec 17;9(12):e0053524. doi: 10.1128/msystems.00535-24. Epub 2024 Nov 19.
5
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities.沃氏菌门细菌的多样性及其代谢作用,该类菌为海洋沉积物群落中的全球性成员。
ISME J. 2020 Apr;14(4):1042-1056. doi: 10.1038/s41396-020-0588-4. Epub 2020 Jan 27.
6
Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis.通过定向培养和催化报告沉积荧光原位杂交(CARD-FISH)分析确定潮间带深层沉积物中活性硫酸盐还原菌的身份和丰度。
Environ Microbiol. 2008 Oct;10(10):2645-58. doi: 10.1111/j.1462-2920.2008.01686.x. Epub 2008 Jul 8.
7
Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments.最初在深海沉积物中发现的一种通过16S rRNA基因序列鉴定的新型细菌分类广泛存在。
Appl Environ Microbiol. 2004 Sep;70(9):5708-13. doi: 10.1128/AEM.70.9.5708-5713.2004.
8
Occurrence, Diversity, and Genomes of " Patescibacteria" along the Early Diagenesis of Marine Sediments.海洋沉积物早期成岩作用中“Patescibacteria”的发生、多样性和基因组。
Appl Environ Microbiol. 2022 Dec 20;88(24):e0140922. doi: 10.1128/aem.01409-22. Epub 2022 Dec 5.
9
Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags.利用上百万个 Illumina 标签比较淡水、潮间带湿地和海洋沉积物中的细菌多样性水平。
Appl Environ Microbiol. 2012 Dec;78(23):8264-71. doi: 10.1128/AEM.01821-12. Epub 2012 Sep 21.
10
Complex community of nitrite-dependent anaerobic methane oxidation bacteria in coastal sediments of the Mai Po wetland by PCR amplification of both 16S rRNA and pmoA genes.通过聚合酶链反应扩增 16S rRNA 和 pmoA 基因对麦埔湿地沿海沉积物中依赖亚硝酸盐的厌氧甲烷氧化细菌的复杂群落进行分析。
Appl Microbiol Biotechnol. 2015 Feb;99(3):1463-73. doi: 10.1007/s00253-014-6051-6. Epub 2014 Sep 16.

引用本文的文献

1
Tidal levels significantly change bacterial community composition in a tropical estuary during the dry season.在旱季,潮汐水平显著改变了热带河口的细菌群落组成。
Mar Life Sci Technol. 2024 Oct 8;7(1):144-156. doi: 10.1007/s42995-024-00254-w. eCollection 2025 Feb.
2
Analogous assembly mechanisms and functional guilds govern prokaryotic communities in mangrove ecosystems of China and South America.类似的组装机制和功能类群支配着中国和南美洲红树林生态系统中的原核生物群落。
Microbiol Spectr. 2023 Sep 5;11(5):e0157723. doi: 10.1128/spectrum.01577-23.
3
Cultivable Winogradskyella species are genomically distinct from the sympatric abundant candidate species.
可培养的维诺格拉德斯基氏菌物种在基因组上与同域分布的优势候选物种不同。
ISME Commun. 2021 Sep 29;1(1):51. doi: 10.1038/s43705-021-00052-w.
4
Spatial co-occurrence patterns of benthic microbial assemblage in response to trace metals in the Atacama Desert Coastline.阿塔卡马沙漠海岸线底栖微生物群落对痕量金属响应的空间共现模式。
Front Microbiol. 2023 Jan 16;13:1020491. doi: 10.3389/fmicb.2022.1020491. eCollection 2022.
5
Comparative Gut Microbiome in and Other Primates in Guangxi, China, Based on Metagenome Sequencing.基于宏基因组测序的中国广西地区与其他灵长类动物的比较肠道微生物组。
Front Cell Infect Microbiol. 2022 May 4;12:872841. doi: 10.3389/fcimb.2022.872841. eCollection 2022.
6
Giant sulfur bacteria (Beggiatoaceae) from sediments underlying the Benguela upwelling system host diverse microbiomes.本格拉上升流体系沉积物中的巨型硫细菌(贝日阿托氏菌科)拥有多样的微生物组。
PLoS One. 2021 Nov 24;16(11):e0258124. doi: 10.1371/journal.pone.0258124. eCollection 2021.
7
Geobiology of Andean Microbial Ecosystems Discovered in Salar de Atacama, Chile.智利阿塔卡马盐沼中发现的安第斯微生物生态系统的地球生物学
Front Microbiol. 2021 Oct 28;12:762076. doi: 10.3389/fmicb.2021.762076. eCollection 2021.
8
Changes in diversity and composition of rhizosphere bacterial community during natural restoration stages in antimony mine.锑矿自然恢复阶段根际细菌群落多样性和组成的变化
PeerJ. 2021 Oct 14;9:e12302. doi: 10.7717/peerj.12302. eCollection 2021.
9
Dissimilatory nitrate reduction by a freshwater cable bacterium.淡水缆菌的异化硝酸盐还原作用。
ISME J. 2022 Jan;16(1):50-57. doi: 10.1038/s41396-021-01048-z. Epub 2021 Jul 2.
10
Mercury methylation by metabolically versatile and cosmopolitan marine bacteria.海洋细菌的代谢多功能性和世界性促进了汞的甲基化。
ISME J. 2021 Jun;15(6):1810-1825. doi: 10.1038/s41396-020-00889-4. Epub 2021 Jan 27.