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新型细菌门 Calditrichaeota 在海洋沉积物中种类繁多、分布广泛且丰富,并具有降解碎屑蛋白的能力。

The novel bacterial phylum Calditrichaeota is diverse, widespread and abundant in marine sediments and has the capacity to degrade detrital proteins.

机构信息

Geomicrobiology, Section for Microbiology, Department of Bioscience, Aarhus University, Denmark.

Department of Cell and Molecular Biology, Science for Life Laboratory, Uppsala University, Sweden.

出版信息

Environ Microbiol Rep. 2017 Aug;9(4):397-403. doi: 10.1111/1758-2229.12544. Epub 2017 Jun 27.

Abstract

Calditrichaeota is a recently recognized bacterial phylum with three cultured representatives, isolated from hydrothermal vents. Here we expand the phylogeny and ecology of this novel phylum with metagenome-derived and single-cell genomes from six uncultivated bacteria previously not recognized as members of Calditrichaeota. Using 16S rRNA gene sequences from these genomes, we then identified 322 16S rRNA gene sequences from cultivation-independent studies that can now be classified as Calditrichaeota for the first time. This dataset was used to re-analyse a collection of 16S rRNA gene amplicon datasets from marine sediments showing that the Calditrichaeota are globally distributed in the seabed at high abundance, making up to 6.7% of the total bacterial community. This wide distribution and high abundance of Calditrichaeota in cold marine sediment has gone unrecognized until now. All Calditrichaeota genomes show indications of a chemoorganoheterotrophic metabolism with the potential to degrade detrital proteins through the use of extracellular peptidases. Most of the genomes contain genes encoding proteins that confer O tolerance, consistent with the relatively high abundance of Calditrichaeota in surficial bioturbated part of the seabed and, together with the genes encoding extracellular peptidases, suggestive of a general ecophysiological niche for this newly recognized phylum in marine sediment.

摘要

卡尔迪特里奇菌门是最近被认可的细菌门,有三个已培养的代表种,均分离自热液喷口。本研究通过宏基因组和单细胞基因组扩展了该新颖细菌门的系统发育和生态,其中 6 个未培养的细菌之前未被认为是卡尔迪特里奇菌门的成员。使用这些基因组的 16S rRNA 基因序列,我们从培养独立性研究中鉴定了 322 个 16S rRNA 基因序列,这些序列现在可以首次被归类为卡尔迪特里奇菌门。该数据集用于重新分析了一系列来自海洋沉积物的 16S rRNA 基因扩增子数据集,结果表明卡尔迪特里奇菌门在海底的全球分布广泛,丰度高达总细菌群落的 6.7%。直到现在,卡尔迪特里奇菌门在冷海洋沉积物中的广泛分布和高丰度一直未被识别。所有卡尔迪特里奇菌门的基因组都显示出化能有机异养代谢的迹象,具有通过使用细胞外肽酶降解碎屑蛋白的潜力。大多数基因组包含编码赋予 O 耐受性的蛋白的基因,这与卡尔迪特里奇菌门在海底表生生物扰动区的相对高丰度一致,并且与编码细胞外肽酶的基因一起,暗示了这个新被认可的海洋沉积物细菌门的一般生态生理生态位。

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