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The unexhausted potential of E. coli.大肠杆菌未被耗尽的潜力。
Elife. 2015 Mar 25;4:e05826. doi: 10.7554/eLife.05826.
2
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。
Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.
3
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
4
Phylogenetic distribution of traits associated with plant colonization in Escherichia coli.与大肠杆菌植物定植相关特征的系统发育分布。
Environ Microbiol. 2013 Feb;15(2):487-501. doi: 10.1111/j.1462-2920.2012.02852.x. Epub 2012 Aug 30.
5
Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice.基于社区和基因组的植物相关细菌视角：大豆和水稻中的植物-细菌相互作用。
Plant Cell Physiol. 2010 Sep;51(9):1398-410. doi: 10.1093/pcp/pcq119. Epub 2010 Aug 4.
6
Environmental Escherichia coli occur as natural plant growth-promoting soil bacterium.环境大肠杆菌作为天然的植物促生土壤细菌存在。
Arch Microbiol. 2010 Mar;192(3):185-93. doi: 10.1007/s00203-010-0544-1.
7
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.

内生植物促生菌USML2的全基因组序列

Whole-Genome Sequence of Endophytic Plant Growth-Promoting USML2.

作者信息

Tharek Munirah, Sim Kee-Shin, Khairuddin Dzulaikha, Ghazali Amir Hamzah, Najimudin Nazalan

机构信息

School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia.

School of Biological Sciences, Universiti Sains Malaysia, Minden, Penang, Malaysia

出版信息

Genome Announc. 2017 May 11;5(19):e00305-17. doi: 10.1128/genomeA.00305-17.

DOI:10.1128/genomeA.00305-17
PMID:28495774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5427209/
Abstract

strain USML2 was originally isolated from the inner leaf tissues of surface-sterilized phytopathogenic-free oil palm ( Jacq.). We present here the whole-genome sequence of this plant-endophytic strain. The genome consists of a single circular chromosome of 4,502,758 bp, 4,315 predicted coding sequences, and a G+C content of 50.8%.

摘要

菌株USML2最初是从表面消毒的无植物病原体油棕（Jacq.）的内部叶片组织中分离出来的。我们在此展示该植物内生菌株的全基因组序列。该基因组由一条4,502,758 bp的单环染色体组成，有4,315个预测的编码序列，G+C含量为50.8%。